Protein Info for mRNA_6570 in Rhodosporidium toruloides IFO0880

Name: 14938
Annotation: K09184 GATAF GATA-binding protein, other eukaryote

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1484 PF08550: DUF1752" amino acids 653 to 680 (28 residues), 44.5 bits, see alignment (E = 1.1e-15) PF00320: GATA" amino acids 1368 to 1401 (34 residues), 48.1 bits, see alignment (E = 7.1e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1484 amino acids)

>mRNA_6570 K09184 GATAF GATA-binding protein, other eukaryote (Rhodosporidium toruloides IFO0880)
MQGFSRTVPDQDVDFSAFLDDAAFDNEPPAASHPLPRLALDALAGKGRAGQLQGAQAGTP
TASTSSGNSPGVSDSTSSPSAAPPETALTSASTSPRIAQLAHFAAMNPAGKLPDGLEQLA
ANWQAHQEAARQAEAAFQQAAAAAAQAAGYPLAGAQGSHGLAAYTAQLGALSYPQAIAPI
APLAPVSSSASYLAQLPHDWLFAAHSAAPAYSGTTTPISHPSFPAGQSPFVSAVAASAQS
PLTSLNHLGQVASPSGAIDPSLYALHASLEAQARMAAAAAAGQASSTPGTPSGFDLAFFQ
QQQQQQAGPSSSTASSPRAHSRAASGQGHRQGSALAKSALGLSAGGSGRPGGVPQRIRTD
ASQHTSPLASPAMLPGIDFASLPSTVYGSPTGYSATPTTTTHQRPLPPMPPARLDTSSTA
SPYSSLPSSAAISPVVSQNPAFPSSRLASSSTLPPSSQPQSPRSAQQSRHAPVDYDFSSL
EQDLDRFSSLGGFASAAAAAIASVSPSTSVAALPGPSAPQQRKLSTSKPSNAYGVGGYGG
SSTPRIAPESLASPKVVAEVLGESLFFPPPPSSGSAKASPVASGSAGGSVGTGSAGASPA
AFSTGTGTGTGKGVSFAPSPSVGDSSASPSGSTIIDEDSAELLSRKDPIAAQVWRMFHKA
KNTMPNGARMENLTWRLMSMTLRKRREDSAPGSAGPDGAASQAPSPGTEEARLRKAMEEA
LEEQREENDTVQPLASSSGRMRGGRDRSDSGAKRAAAPPPARAEEAAEDEEERGRGRRTK
SGNQSKSKSSTPEAEEQQDDAMDWRAMSKSRSRSRAPDMMDWRAQSRSRSRAPDFRVSVA
PPAIDNTPAVANFSRFFSDNGLPSPVNESPSEMPPPPLPSSSSSTAPRPLSITTQDVNSA
ALAELATSLGLSPQDQAELFGSASARFDGHSLLDLPSPGGVASPPATLHQALTSPLQSNV
TSPLSASPHHAFAFPNGTHSPDGAGPDANLAAIESTLNQLISLQNLASPPASSPATIDPS
AFIAPGNAKSPLSASFTASLPGSSSEHTPQASTIHSRRSSASGSSLSKSSQAQQHLQQFI
SNRKASTSSAPPAASTSASSSRRTSVPAPSPYLTATALAQPPRSFSFGAAASVAAAAANN
PTPASGLSLARPESIPPQLSQPSTPFSESPLPQFFSGSAPVQPSALVGTPNQPTQYGSAS
NDTTGLLYDYFHATYQPSPYLSQQQLDTFGSAPASVDPSQLLNSASASPFGSPVSSWGVN
PSSLEGSVLPTEEKKKARRPTSARANSTGSVGTIASTKAKSAPASRAHSRSNTISLPSTI
EEGKALVTGDISTAPSGETKSSSSSPAPTAGGGTISKKVDADGGPIKCLNCGTTNTPLWR
RDSEGKPLCNACGLFRNLHGVDRPANLNTGVIKKRNRNRGPKDPNAKKSAARNKARANSA
ASVAGAAGEGSTSSTPTAAGRKERVGAGAPYPNAAARAAAAQQD