Protein Info for mRNA_6573 in Rhodosporidium toruloides IFO0880

Name: 14941
Annotation: K20472 COPZ, RET3 coatomer subunit zeta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF01217: Clat_adaptor_s" amino acids 1 to 149 (149 residues), 70 bits, see alignment E=1.1e-23

Best Hits

Swiss-Prot: 40% identical to COPZ3_ARATH: Coatomer subunit zeta-3 (At4g08520) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 50% identity to lbc:LACBIDRAFT_241431)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>mRNA_6573 K20472 COPZ, RET3 coatomer subunit zeta (Rhodosporidium toruloides IFO0880)
MVTAVILIDNDSNRVLSKFYQPAHPDPKNPNAFKHPFQTLKEQRAFEAAIWEKTRRQNGD
ILLYENQLVLYKQSIDLTFYIVGPAGENELMLQGVLTGFYDAVAMLLRHQVEKRSILENL
DLVVLALDETIDNGIVLETDPVAIASRVSRPKPDAGVNLADIQLNEQSIMQAFTTVRDKI
GQRILQG