Protein Info for mRNA_6579 in Rhodosporidium toruloides IFO0880

Name: 14947
Annotation: KOG0871 Class 2 transcription repressor NC2, beta subunit (Dr1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 PF00808: CBFD_NFYB_HMF" amino acids 20 to 83 (64 residues), 56.6 bits, see alignment E=1.3e-19

Best Hits

Swiss-Prot: 40% identical to NC2B_ARATH: Protein Dr1 homolog (DR1) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 56% identity to cci:CC1G_00095)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>mRNA_6579 KOG0871 Class 2 transcription repressor NC2, beta subunit (Dr1) (Rhodosporidium toruloides IFO0880)
MNSDDEGPRSGGGGDDEVALPKSTINKLIAESLPAGFSAAKEVKDLMAECCKEFLLAVSS
EANEICEKDSKKTMLPDHILSALKALGFEEFVSGVEDVLADHKEVKKGEKAKKAKKAAGN
GMTEEEMLKIQEELFAKSRARMDAGEGAAPAALGEGEGEAKEEKQEE