Protein Info for mRNA_6581 in Rhodosporidium toruloides IFO0880

Name: 14949
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 transmembrane" amino acids 113 to 134 (22 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 379 to 399 (21 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 443 to 463 (21 residues), see Phobius details amino acids 473 to 491 (19 residues), see Phobius details PF07690: MFS_1" amino acids 121 to 428 (308 residues), 80.2 bits, see alignment E=7.7e-27

Best Hits

KEGG orthology group: None (inferred from 53% identity to lbc:LACBIDRAFT_333006)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>mRNA_6581 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MQHPAGPATPAGLTSPASTSRDPAATPPPAFAQEAAMLGEEGAALPGEGQAAGSRTPTVA
GVEDLDPKAEGTSTLANEGEVPPTLRQRGGTTDFGFLPIPPRLRFDPDKPFEFGLLLNVV
FAFAATFSVANLYYPQPILIVLSDKFNCSYDRVTNIPTLLQASYALGLAFICPLGDLVRR
RPLLLLLVGIAAILSLILALIPSLTAFQAISFFLGAASVTPQILLPLSGDLARPERRASA
LSIVLSGLLLGILLARVLSGLIAEKASVLALYYMSFGVQIAIWFLVYEMIPDYPAKNPDL
HYFEILWSMVKYLFTEPVLVQGCLICGVGSIIFSAFWTTSTFILGDLYHYNSLEIGLFAL
IGIAGVCAAPLLGRLVDNLVPWVGVLLGIVILAISQAIFTGAAGVSIGALCVVIFTLDIG
MQLQQVANSTRIFGISSAARARLSAVFLVCIFAGQLIGTAAGTRVYLDYGYRASGGLCVG
LTGFMLLVLFLRGPHCPVKQWFGWTGGWELRKAVHERKQAERRTSGIEMDEKAV