Protein Info for mRNA_6586 in Rhodosporidium toruloides IFO0880

Name: 14954
Annotation: SUPERFAMILY--SSF55729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 51 to 70 (20 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>mRNA_6586 SUPERFAMILY--SSF55729 (Rhodosporidium toruloides IFO0880)
MDQPQPDPQDPTTAAPPPAAIRPFDTKTDLKLVRYLVGASVMEPSSLANQAALFTPYSLV
ACLALSHFLITRYTSGYPALIHNYIYPNAPKALNLGSTYGQTLADFLLILPLFIAPPIAI
LAMFEWRHRNLFEMEMRRTIGEEDLRDIEAYYDVESEKAAVGGVPKKQAKGESTSRPEER
RGFWVLEYDNRLIGAVGLDGRKPGQPLDSVVDQIIASAEASKKAKKSSDSLSADSANASA
ETSATADSTARNLRSRTKQATPSVSVTPPTPSSGASPTSFTLDPSASLPEGTLHLRRFAT
SMSFRSAGIEDELLDFVAKYAFASTDSPIEPAKQIVFALRPTVQKSLRKVLERHGFELVP
KGSELEVPIVGGPGAAVGKKHVKSIAERLWPLDLDVRTMVLKRSTWEKSQQ