Protein Info for mRNA_6591 in Rhodosporidium toruloides IFO0880

Name: 14959
Annotation: K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 signal peptide" amino acids 52 to 55 (4 residues), see Phobius details transmembrane" amino acids 56 to 73 (18 residues), see Phobius details PF00621: RhoGEF" amino acids 545 to 714 (170 residues), 90.7 bits, see alignment E=7.4e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>mRNA_6591 K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6 (Rhodosporidium toruloides IFO0880)
MGVMRGMVQAARDAKATLGRLPSRPRPPPLSPPRHPRFAMPRHPHARSSNAYGRHTAVVG
STLLVVLGGGAVLSKPLLMQDEDDPTALSSARPSFSSTRSAHNKWLSSAGGHGSRRPSEV
SVSTQTSGDTAFEDADEGSDRAWGSRTSSWSNLRAASSRRGSNGVADGHPGLATIFDNSP
FIPTVPLVDNLGSPEISYGYARGSPGRDQEREGFVVEEQEDEEDSTDEDKRGTNLSRRLH
FRTSWHDRFSKLAEEIRVEPTADADPLDIDLDFLRFGSSEPSSYIPPARMPTIYDFTEIT
EAPVTRQLSPPDDSPHADSSARSATPSLSLTPSISSSLPSPSTPHLSQIPSASGSNPASP
APSSTATLPLPPGAGTRRPTSPNLLIPGPRPPLDRQTSDDVVASRRLSSGAGGMSSSKST
NRLSAILTGGLGFGRSRTNTDAGDGVRRRRTGSDTVPPPHSAPLSSVPSFSSLARSESPQ
PLRSHSPSLRRASPPPARPPPSAFAASPLTHSPDSSRTWRSTMDDRTYSRLLSSYGEVEM
RRQEVIWELAETERMFVESIKGVMQLFTVPLRSRTGTWVKNVPPPVSRLLEWLDEIIVLH
SQMLRTLQRIQEQQSPIVTHLADSLLPFVSRLEVYQPYLIRFEVVTNLIDELAANPLDRF
GEFVRLQNGRPECGGLSLASFLLKPVQRLMKYPLFFKQLCDLTPRDHPDFNASLVLYQST
DSMIRALEEVKAREDEYEELKVLETRLRGLPEGLKLAKRDRKLVLQGTLKQVHVSERDRA
VLKMDARARAKAQAVRDQQARRPNGVPGPRLRTSLPPPPLLSPRDGSRPVSTVSADSSSS
SVSASSSSAATWTSDASSNGWISPATPVSINGGDRGGWKRRPTSMVSTASSAWSEDWRPP
PPPSDSHSHTGTIKPSKRPLSPPSYFPPLTTSSTRLLKTRAKESTVQVFVFSDVVILATP
KRDDLSKMLKGSRTSYREGADKAASFKVLEGVGVARVLGVTDFSGKTEHESLVELDLAPI
LKDSARLVPGSTTTSVFLTLPATSTPSPVSSPFPSASRPGSAHGTPSPSSPSIAHLDRQR
WLRAFSLPLDFAQQQSLASPLNGCTTPITQAERHFASTAPSTSLRGREGADTEREWWTQR
LRVVRKEMAAEGRFVSPATVSPEWALTKVPPTASASPRAAPGFQAGRVLEAGGADGHGLG
IDSLAYSFGSGGGRRRT