Protein Info for mRNA_6598 in Rhodosporidium toruloides IFO0880

Name: 14966
Annotation: K11518 TOM40 mitochondrial import receptor subunit TOM40

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF01459: Porin_3" amino acids 53 to 347 (295 residues), 241.2 bits, see alignment E=7.2e-76

Best Hits

KEGG orthology group: K11518, mitochondrial import receptor subunit TOM40 (inferred from 53% identity to cci:CC1G_04236)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>mRNA_6598 K11518 TOM40 mitochondrial import receptor subunit TOM40 (Rhodosporidium toruloides IFO0880)
MAAQPQFAAPFPPTVPVAVDPTYSSSLPGFLAPVGNLLDRLDAARDRLNLPDPGKHEDLG
REVKLTHLTNYTFDGARADLAKTLSQVPAFQVTHSFAAGSQGGPMGGINPGTYNFGAVYA
TPKTFMQGMVDNEGSVTGRFNYGWSPKNTTKMSVQLAASAAAPSMFSLEHDRVGKDYTLS
VKAYNPSPADLTGSYIAAYLQSITPHFAVGVETLYQRPTPDMEDCSLGYMAKWHNVKKDE
AGNQLKDSWIATAQVMSQGIWQATYWKKLADRVDAGVDLVCIPAMNPRERKAVATAGVKY
DFRTATFRGQVDSTGKVSALLEQRLSPAFALMLAGEMDHVKQTSKWGVGVSLESSSEDAM
AYAMNHSAEAAIPPPL