Protein Info for mRNA_6602 in Rhodosporidium toruloides IFO0880

Name: 14970
Annotation: K07953 SAR1 GTP-binding protein SAR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details PF00025: Arf" amino acids 42 to 220 (179 residues), 223.3 bits, see alignment E=4.7e-70 PF09439: SRPRB" amino acids 51 to 178 (128 residues), 37 bits, see alignment E=7.7e-13 TIGR00231: small GTP-binding protein domain" amino acids 51 to 173 (123 residues), 55.2 bits, see alignment E=3.8e-19 PF01926: MMR_HSR1" amino acids 54 to 161 (108 residues), 30.7 bits, see alignment E=9.1e-11 PF04670: Gtr1_RagA" amino acids 54 to 164 (111 residues), 23.6 bits, see alignment E=9e-09 PF08477: Roc" amino acids 54 to 164 (111 residues), 32.7 bits, see alignment E=2.3e-11 PF00071: Ras" amino acids 54 to 169 (116 residues), 29.6 bits, see alignment E=1.5e-10

Best Hits

Swiss-Prot: 84% identical to SAR1_USTMA: Small COPII coat GTPase SAR1 (SAR1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K07953, GTP-binding protein SAR1 [EC: 3.6.5.-] (inferred from 86% identity to scm:SCHCODRAFT_74690)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.6.5.-

Use Curated BLAST to search for 3.6.5.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>mRNA_6602 K07953 SAR1 GTP-binding protein SAR1 (Rhodosporidium toruloides IFO0880)
MLDVTVMHAGTAASPPGGLSHDLRNSIMSSWFSGLFSWAFDLLASFGLVNKNAKILFLGL
DNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVKFTTYDLGGHQQARRLWKDYFPEV
DGIVFLVDSQDTERFHESKAELDALLAIEELAKVPFLILGNKIDAPGAVSEEELRYALGL
HATTGKGKVPLTDMRPIEVFMCSVVMRQGYGEGFRWLAQYM