Protein Info for mRNA_6605 in Rhodosporidium toruloides IFO0880

Name: 14973
Annotation: KOG2177 Predicted E3 ubiquitin ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 PF13639: zf-RING_2" amino acids 208 to 237 (30 residues), 29.7 bits, see alignment (E = 1.7e-10) PF13445: zf-RING_UBOX" amino acids 209 to 239 (31 residues), 37.9 bits, see alignment (E = 3.5e-13) PF13923: zf-C3HC4_2" amino acids 209 to 236 (28 residues), 29.8 bits, see alignment (E = 1.1e-10) PF15227: zf-C3HC4_4" amino acids 209 to 237 (29 residues), 31.3 bits, see alignment (E = 4.6e-11) PF00097: zf-C3HC4" amino acids 209 to 238 (30 residues), 31.6 bits, see alignment (E = 3.1e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>mRNA_6605 KOG2177 Predicted E3 ubiquitin ligase (Rhodosporidium toruloides IFO0880)
MPRATRSTPANRSPTRAAPAQQPAEAASSSSNSPKKRARPDASLDMPDALEAMEHKDNEG
RVASAPRKTRRTGKAKQEDGSSVGQSGGGEAGEVATGESRSPLRRTRSSAAMVTDDEPAA
TGEEGSQASSSTLEQAQDGEVIFDGSGMSAEQRRKAKGKGKALEQDQVEMEDASEEDELT
RLRKELAANKELMAQQQAALASVHSAIACAICTEPLDRPYSLQCGHVFCRKCLVTWFFRA
DPDEEDRQNAAEEQATGSSSSSSSSSDDEDDASSSSGSIHSHMGGHINGRAFQITGLEGA
DDESKRRLFEMGNEALLRFGFNLPGREAARNGRATSEEGGTEGSEGGKIVEIEKEDEEEE
EKEEKEEKQLSRDELRQKRLAALARFGFDINVLGGDSSVGRRFLEVKDEEKGDEQPPTAG
PSTSRPAPAVTTNASASTSAPRRPEPAASAAPPAPPKSPLKPRPPPPPVPTGAHRAKNLV
CPSCRAICSEHSPNRVFVLDEIVTSLRRSNVDESGSIGSSAGAWRARAETAEDGWPAMDE
ADESWGGLFPGPGGKESASDRRRRLAQIVRDRDDGVRRCGECNWELDERTGICEGCGRRW
DISDDDSDDDSNDGYTFGGLLGFGRHRLGRQHHDVELSATEDDSDNDSQPARAALYDSQE
SYESDFVVKSDEEEEQERERTEARLRLRREAVRRRRRRLEASGSDTNGSRSSSSSSASKS
GSSSSEEDEDSDDERVARRRRRTRRQQGEVIDLDSDTDSDEDELQGSSDGTGDGSSGSDS
DSGSERGGGRGFLDDEVSVKKSKKKRIILDSDDDDDDE