Protein Info for mRNA_6606 in Rhodosporidium toruloides IFO0880

Name: 14974
Annotation: KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 transmembrane" amino acids 15 to 31 (17 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 488 to 511 (24 residues), see Phobius details PF01852: START" amino acids 178 to 338 (161 residues), 32.1 bits, see alignment E=4.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>mRNA_6606 KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer (Rhodosporidium toruloides IFO0880)
MATTQQAVAVQDTNKSILSLLLSLSPLWFIVQSRTRLGLDTLHVGLLQVVLLLVLRVGLD
LIPTRLRRKTAEPAPAPVVQPAVQEAARVGNGVDVKEKQKSRRRVKKKVAAAPPAPFPAE
KLDETVANFLHITEPAFLSYVPVKPTTSISSAPLSEWKKTFSGDNVEVLQHPTLSSLFGI
CATFPDVPIRNLFQVLQDIGKRPVWDGMCSGASEIERFEVDGRKGNALTMQMKGMAMIKA
KDLVLLSVAGKLPTPEDDMEDGQPTAEKLRIFAASTSVDHPKVPPTPQYNRMTLSISGFF
IEEVGKGSKIVQITDLSGLGSWVPNSVLRTITQTMLPKSLAKLGAAAADVTEFTSEFPPP
TLGKKAPSTANGHANGEAGGEEEEEDEEESDYEDESDDEDSSASDATRLSPSASRDLHSL
LSQLRSLTSRLAVLETLVSSPSAPASSSGVAATPTRRWYSPFSSSSGSGAGKGYGGPSDM
VTMSPGKLSALATLGSAAGAAIAVAAVTAVARRRK