Protein Info for mRNA_6620 in Rhodosporidium toruloides IFO0880

Name: 14988
Annotation: K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 PF16320: Ribosomal_L12_N" amino acids 8 to 56 (49 residues), 45.9 bits, see alignment E=3.6e-16 PF00542: Ribosomal_L12" amino acids 71 to 138 (68 residues), 70.1 bits, see alignment E=1.6e-23

Best Hits

Swiss-Prot: 38% identical to RL7_PROM4: 50S ribosomal protein L7/L12 (rplL) from Prochlorococcus marinus (strain MIT 9211)

KEGG orthology group: None (inferred from 61% identity to scm:SCHCODRAFT_46551)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (139 amino acids)

>mRNA_6620 K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12 (Rhodosporidium toruloides IFO0880)
PAPPLNPKIGQIVDQIAGLTLLEAADLVDALKSRLNIVDIALPAAAPAAAPAAAADAPAP
EAAAPKEKTVFNVQLTKIDAAQKAKAIREVKAIMPGMNLVEAKKFVESLPKTLKEGANKE
EAEKLQALFKGIGAEVALE