Protein Info for mRNA_6630 in Rhodosporidium toruloides IFO0880

Name: 14998
Annotation: KOG0463 GTP-binding protein GP-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 PF00009: GTP_EFTU" amino acids 228 to 446 (219 residues), 70.8 bits, see alignment E=1.2e-23 PF03144: GTP_EFTU_D2" amino acids 477 to 547 (71 residues), 31.3 bits, see alignment E=2.3e-11

Best Hits

Predicted SEED Role

"GTP-binding protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>mRNA_6630 KOG0463 GTP-binding protein GP-1 (Rhodosporidium toruloides IFO0880)
MAARFDQRAMGEPIHSTTADERPSLRSFQEELQQKAKAGRELAHPRRAQDAAGLAEVADK
VHELSIDEGDVLDGGDGRTLRDRLTNPNEDDVAAIATLLDRTLSRRHGELILQIGSHSLD
ETTVAALLELPDSKTVPPADTAVLTPAQIDAILSTLRSAVSIISSDVSILHNPYDESGKP
RTDESAQLTPTPSAINDDETAKRWKGKALRLLVRKKPEGAEELLESRVSVVGNVDAGKSS
LLGVLTRGRLDDGRGRARVSLFRHKHEIETGRTSSAGNEILGFQPDGKAIAPEEHAKQQA
TWESIAQKASKVVSFTDLAGHEKYLKTTLAGLTGTAPDFVLLIIGANAGLIGMSKEHLSV
ALALSLPIVCVITKVDSTPAPVYEQTVKQLVKILKSPGCRKKPVFVNDVGMACELASGFA
AEKACPIFRCSNVTGEGLDLLKTFLNVVRPTHTDELYPVNADFEFATSDVYSVPFVGTVV
SGVILAGSVRPGDTPLLGPDSVNSFIPASIKSIQRKRVNVDYAEAGQAVTLALKRIKRAQ
VRKGMVLVARGETPPVATRRFEGQCLILYHNTMITSRYQAMMHIGAARQTVQIEKIVEKQ
AVRTGDRATLRFRFMARAEYIHVGDRFLFREGRTKALGVVTRLLPDNGKDADGPDA