Protein Info for mRNA_6636 in Rhodosporidium toruloides IFO0880

Name: 15004
Annotation: K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 PF00753: Lactamase_B" amino acids 41 to 227 (187 residues), 72.2 bits, see alignment E=2.2e-23 PF13483: Lactamase_B_3" amino acids 42 to 212 (171 residues), 22.7 bits, see alignment E=2.8e-08 PF16661: Lactamase_B_6" amino acids 50 to 220 (171 residues), 64 bits, see alignment E=4.8e-21 PF12706: Lactamase_B_2" amino acids 53 to 236 (184 residues), 28.7 bits, see alignment E=3.2e-10 PF10996: Beta-Casp" amino acids 276 to 403 (128 residues), 100.8 bits, see alignment E=2e-32 PF07521: RMMBL" amino acids 419 to 484 (66 residues), 53.6 bits, see alignment 6.2e-18 PF11718: CPSF73-100_C" amino acids 517 to 813 (297 residues), 215.6 bits, see alignment E=2.3e-67

Best Hits

Predicted SEED Role

"Cleavage and polyadenylation specificity factor, 73 kDa subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (857 amino acids)

>mRNA_6636 K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3 (Rhodosporidium toruloides IFO0880)
MAPVKRKGPGDTVGVAQISPEGITGLDDEMEVQLLGAGQEVGRSCCVIRYKGRTIVCDAG
VHPAFSGMAALPFLDELDWSTVDAILITHFHLDHAACLTYVMEKTNFKEGNGVVYMSHPT
KAVYRYLMSDFVRVSTAGSDDNLFTESEMLASFDQIQSFDFEQEILLPPSSTSSASVRFT
SFAAGHVLGACMFLIEVAGARVLYTGDYSTEEDRHLVPAKVPNWERPPDVMICESTYGVQ
SHEPRLEKEAQFTNLVRSILKRGGRVLLPVFALGRAQELLLILDEYWAEHPELQHIPIYY
VSSLAIKCMDVYRQYIHTMSPNVRSKFARGINPFDFKRKDSFIRPLDRGISKLNDRNPCV
VMASPGFLTSGVSRELLEKWAPDPRNGLIITGYSVEGVMARTIMNEPTEIAALNGGAKIA
RRLSVDYISFSAHVDYTQNSKFIDEVMPSHLILVHGEVNNMSRLRAALKTRFAERKNDVQ
IYTPRNVETVKLKFRGERMAKALGSLAQTALTPATPLSGLLVSKDFSYTLLSPADLREFT
GLSTSLILQRQRLALSVSWDLVRWHLQGMYGKIKEGRDAEGTPTMRVMETVDVKMTDKHE
LAIEWVGGVTNDMIADSVLAVVLGIEGSPASVKKTTDDHPHHHSHPHPYAEAPTPPATTD
EPEAAKMEDEEAAVLPTRLDRLIAFLDSYFGQVELIRPEELSTPPANGDVAHEADVDVKG
VAEETAVKVEADESEPAEKVEDKAEAEAEREAAKERKRLEDERQRPRAPVIRVKLDEHWA
DVKVEDLTVVSDYTPLQRRVESVVQIAMAIVTPLSALAPGKGSAKAPTLADDLHKVKKRV
AENGSALPAVQEEAASA