Protein Info for mRNA_6637 in Rhodosporidium toruloides IFO0880

Name: 15005
Annotation: K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1010 PF08797: HIRAN" amino acids 95 to 171 (77 residues), 49.4 bits, see alignment 1.1e-16 PF00176: SNF2_N" amino acids 316 to 691 (376 residues), 211.4 bits, see alignment E=5e-66 PF04851: ResIII" amino acids 372 to 559 (188 residues), 24.1 bits, see alignment E=9.8e-09 PF00097: zf-C3HC4" amino acids 746 to 783 (38 residues), 22 bits, see alignment (E = 3.6e-08) PF00271: Helicase_C" amino acids 826 to 949 (124 residues), 53.1 bits, see alignment E=1.2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1010 amino acids)

>mRNA_6637 K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 (Rhodosporidium toruloides IFO0880)
MSSADGSRGQSTRASPVPSTSKLPSTPSSLGPDDDVKSTSKRSSSPDTKGKGRALPGEDG
GAGDVDGVKAEDGEAGDVKLNPEEEILLGAVPKAKIVGLKYARGIATLKKGMQVELRRDP
YNVTDKNAIEVRHTKGGQRIGYLKKELAARLSNMVKERKIRLEAVAGDVPFNTVGLFEMP
MRLEIWGKRKFASDARLDWLSAEKNAQRKAEKLKAEALKTAMEEVEADGGGTNGVNGKGG
TSGGGAPAQGAAGGKSKQEIEREIAMRQSILLARQNKGDMLGDMFKEGAMDPAALPVHPC
PPGRKDGTMRTDLLPFQRQGLSWMIKMEHPELPKTPDDPPVQMWTMKEDSQGEKFYHHIG
TDTTRRKKWRLNRGGILADEMGLGKTMQTIALICTDDTGEGVLPEPEDPDEEYDDMTLIV
CPLSVASNWTDQFSQHVGKKRLKWHFFHGEGRELSKKELRKYDIIITTYQTLAGTIEGDS
RKSSRATSHAGTENDDEDDDDDRPAKKRKISQKDLALLEIKWRRVVLDEGHLIKNPKAKM
SRACVKLQAERRWILTGTPIVNAVGDLGAMIQFLRVCQPLDEPNVWREYVAKGDDQERAK
LLRAVVLSTTLRRTKDMLDSAGKPLISLPEVLYYKHEVELKQEIRDLYKEVEDEVGKNVK
KTFEEGSSKASYTHILCLLLRLRQLACDPTLCPPEFIEDIRDRKLAARIQRDHESATGVS
QGSLDAQQLSYLRTLLKEMAEAAADCLACGQWATEPRITICQHYFCQSCIESAVDAKGAC
PYCGLALSRDHIIAPPVDRGVSPSTSRAASVSSRHDSVSPVERTAKTEALITLLKSTPPG
VKSLVFSQWTSHLDRIEAALVAEGITSCRFDGSMRQDKREEVIKSFTVPNKNATAGSKED
RKNPMVMLLSLKAGALGLNLTVASQVFLMDPWWQPAIEQQAIDRVNRIGQTKPVRIFQLV
AKDTVEDRVLKIQAKKEALIAQAFSGHKNAGKSKSKIEVNDLAAIFNIKT