Protein Info for mRNA_6639 in Rhodosporidium toruloides IFO0880

Name: 15007
Annotation: K00362 nirB nitrite reductase (NADH) large subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1081 PF07992: Pyr_redox_2" amino acids 60 to 290 (231 residues), 116.3 bits, see alignment E=6.9e-37 PF00070: Pyr_redox" amino acids 147 to 219 (73 residues), 42.2 bits, see alignment 3.9e-14 PF04324: Fer2_BFD" amino acids 468 to 516 (49 residues), 44.7 bits, see alignment (E = 5.4e-15) PF03460: NIR_SIR_ferr" amino acids 608 to 670 (63 residues), 43.7 bits, see alignment 8.1e-15 PF01077: NIR_SIR" amino acids 680 to 816 (137 residues), 70.2 bits, see alignment E=6.1e-23 PF13806: Rieske_2" amino acids 905 to 1013 (109 residues), 58.5 bits, see alignment E=2.3e-19 PF00355: Rieske" amino acids 910 to 994 (85 residues), 34.5 bits, see alignment 6.4e-12 TIGR02378: nitrite reductase [NAD(P)H], small subunit" amino acids 917 to 1013 (97 residues), 109.7 bits, see alignment E=7.3e-36

Best Hits

Predicted SEED Role

"Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)" in subsystem Nitrate and nitrite ammonification (EC 1.7.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.7.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1081 amino acids)

>mRNA_6639 K00362 nirB nitrite reductase (NADH) large subunit (Rhodosporidium toruloides IFO0880)
MVGMAFIEKMLDLDKDVGRYFLRTCGEEDHLAYNRVGLTEYFQHRNVSDLYLNSPSWYAS
QLPDRFAFSTGEKVIEIDPLNKNVFTSKGNVYQYDILVLATGSNGALPPYVSSAQAAETK
GVFVYRNVSDLEAIMDYADKPEITRASVVGGGLLGLEAAKAVYDLPTIPDVNILIRQNYP
LNRQLDASAGEMVLHEIEKLGVKVLTGCEPKAITTETNEAGEKVFTGFQLANGETLGSDL
VIYGIGISPRDELAAAAGIKVSSRGGIEVGDDLMTSARDVYAIGECASWQGNTYGLIGPG
VEMADILAFNLTQTVGHAPRKMNAPDLSTKLKLMGVDVASFGDYFADERLAKEAAAAEAA
AQQAAPKEEHGVAISTVKPSRKRPRNTRNDPIKCLTYSDPISATYRKYIFTADGSHLLGG
IMIGDTGAFTKLVSIVKKKKKLDVPPSQFILGAKKEEDDGADLDDDVVVCSCHATTKGAI
SQCVRNGMTELAEIKCKTKAGTGCGGCLPLVTNIFKSEMKKAGNAVSNNLCVHFKMSRVD
LFQVVKVKRLRDFRSIMRAAGSDPDSIGCELCKPAVASILASLYNDFVMKPRHHGLQDTN
DRFLANIQRNGTFSVVPRIAGGEVTPEGLIAIGQVAKKYGLYTKITGGQRIDMFGAQKAD
LPAIWEELGAAGFESGHAYGKSLRTVKSCVGSTWCRYGIGDSVGLAIDLENRYRGVRSPH
KFKGGVSGCMRECAEAQSKDFGLIATDKGWNLFIGGNGGANPRHAVLFAKDVPPSKVVRL
VDRYLMFYIRTADKLQRTAPWVEGFEGGIEKLRKILIDDELGICADLEAEMDNLIGTYQD
EWATAIRDPEVRKSFKQFANTEERRLNSELIIERGQQRPADWPKNFPGQRFEDKDIRTPR
SQWRYIKLATTDDLSPTEENTTSCAVRYGEDSQLAIFHVPGKGYFCTQQMCPHKRAFILE
HGIVSDDGSGHLYVSCPLHKRNFRLDNGDCLNDEEYKILAFDVKEENGDLLVQVPPPDEL
DALIGSSKWMVRKATAEAFGRNAATAIEIVGPSGEVDEDKKAAGTECGEADKSCGTHKLE
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