Protein Info for mRNA_6644 in Rhodosporidium toruloides IFO0880

Name: 15012
Annotation: HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 96 to 120 (25 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 165 to 190 (26 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 302 to 328 (27 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details amino acids 471 to 494 (24 residues), see Phobius details amino acids 514 to 533 (20 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 84 to 491 (408 residues), 106.2 bits, see alignment E=9.3e-35

Best Hits

KEGG orthology group: None (inferred from 46% identity to lbc:LACBIDRAFT_299569)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>mRNA_6644 HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744 (Rhodosporidium toruloides IFO0880)
MDSDLHNRPTAGPRTLTDQSLLTKPSPSSDSFEPAKPVPQLAFGDADYSKPPREDGSGSW
VGRTWAWLIRSENVEAHGVGPLKEEHRTDARFLSNFTLWLTMNATIACFSTGTLGPLYYS
LSMRDSFLVIAFCNIFSCGIPAYISTFGPRLGMRTMGIARYSYGYYPAILPALLNLISFI
GFCAVNSIVAGQVLAAVNPGHLSTTAGIVIVAVVSMFISFCGYRVLHAVERWAWLPVILA
FILLTGFGGRHLGSATSFAKDVPATAANVLSFISIVVGFTISWGGCSADFNTYMRPTVPS
YLVFIYTFLGLYLPCALIQILGAAFAAAALSGEVPTWEAAFGDGSVGGLVGVAMEPMKGF
GKFLLVIFSLGMISNNAPTQYAFSLSLQIVFPFLTRLPRFLLPIAGTAIYLPIAIAAAAH
FAAALSNFLGLLGYWSSIFVAILLIEHLLFRRGHFSSYDLSLWDRSSRLPPGIAALFASF
CGAAFCVVGMDQVWYRGPLAVSIAGPSVSAGGDIGFETGMAVAGAVFVPCRWVERRVFGR