Protein Info for mRNA_6646 in Rhodosporidium toruloides IFO0880

Name: 15014
Annotation: K14647 vpr minor extracellular serine protease Vpr

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00082: Peptidase_S8" amino acids 184 to 612 (429 residues), 128.4 bits, see alignment E=3.5e-41 PF06280: fn3_5" amino acids 632 to 756 (125 residues), 32.7 bits, see alignment E=1.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (944 amino acids)

>mRNA_6646 K14647 vpr minor extracellular serine protease Vpr (Rhodosporidium toruloides IFO0880)
MAHGSLALLLLLLAASAQGAAAFGGKSATGGRSVVPNSYILQVNASAPVLAKRGVSVFEA
LDHTLAAVKQNGVKYTVRQRFDAIPEAFQAVSIQVEDGASMAELAQIPGVQRVWPVSLIP
RPVEPTVSDFTPVSSSSSAKSKRDHHTLEKRGTTFPPASAYLNDTFYPHVQTGIDVLHNK
GILGQGVKIVVVDEGVDYTNPLLGGCFGPGCQISFGYDFVGDNYIGTNAPVPDSDPFSSC
SNHGTHTTGTVGALANEYGFSGAAPMATIGHYRVISCSGATTDEVLVTALTRALQDNVNI
VTMSLGSSVGWLDDSPVQIMANYLGSKGIHVVASVGNERNEGLFAADQPAASRIGTGVGG
VDPTYLAAYYAYLIKRDPVPYISPTPFNLPNNYLLYFTSTDTSVTDDACNPLPSTTPNLA
NRVVVVQRGTCGFTVKQQNVAAAGGKIVLIYNSKGSGLIPQLDVGSTGLTAVGSLRYEDG
LKLLSYYQSSPRGQSISFPNGPLAPYVTNTVSGGVVASYSNFGPTNELFIYPTLAAPGTD
ILSTVTGGVALMRGTSMAAPLVAGAYALLLSVGNNLQLLPEEARTILMSTSQLSPVAYGS
NTLDTVVSQGAGVINMTAAVAAHTVISPAQFNLNDTQYSNNTQTLTLRNNNRYPVSYQLS
WVDSTGIVTYNDGATTDIIPSTTPNYVSTTVLRVAFSQRTVTVPGGQTVKVTAQFIPPNL
TAQQRNQFPIYSGFVTIAGQGQGAGAGQVENYSLPFFGLGARMLDMPVLDTTNVALGPNL
PFIAVGQNIQTGPTTFSESDPAVVYFRLAAGTRRLRVDLVDASTSYKATVPAVTNPPSRL
VKRSNTELMPRAAFPTLYSQVRTVGSLFAPSYWPPRDYLFNNGGTYSDYEIPLDGSFTFP
NGTKGMAELGKSYKVLLRALKITADPTYTSSYESWLSPSFTFTA