Protein Info for mRNA_6650 in Rhodosporidium toruloides IFO0880

Name: 15018
Annotation: HMMPfam-Domain of unknown function (DUF1772)-PF08592

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 44 to 62 (19 residues), see Phobius details amino acids 74 to 96 (23 residues), see Phobius details PF08592: DUF1772" amino acids 28 to 141 (114 residues), 70.6 bits, see alignment E=9e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (147 amino acids)

>mRNA_6650 HMMPfam-Domain of unknown function (DUF1772)-PF08592 (Rhodosporidium toruloides IFO0880)
SASDSQVLLAARSIAVVGLGLNAGLMLSITLWSNLYEQGKAVMMKLQPTLTLLLAYASYA
AARPVDYLPANTPILGVASALTISIVGFTGVVIMPLNRRMQKLEREASVASTAQADSLIG
QWVRLHAVRIALGTTAFALAVSELALA