Protein Info for mRNA_6652 in Rhodosporidium toruloides IFO0880

Name: 15020
Annotation: K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF03297: Ribosomal_S25" amino acids 2 to 97 (96 residues), 135.8 bits, see alignment E=2.8e-44

Best Hits

Swiss-Prot: 55% identical to RS25A_YEAST: 40S ribosomal protein S25-A (RPS25A) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K02975, small subunit ribosomal protein S25e (inferred from 73% identity to ppl:POSPLDRAFT_109937)

Predicted SEED Role

"SSU ribosomal protein S25e" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (102 amino acids)

>mRNA_6652 K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e (Rhodosporidium toruloides IFO0880)
MAKAAAGAQAQSKSAAKKKKWSKGKVKDKAQNAVICDKPTFDRIMKEVPTFKMISQSVLI
ERMKINGSLARVAIAHLEKEGLIKPVIRHRAQLVYTRTTSEE