Protein Info for mRNA_6660 in Rhodosporidium toruloides IFO0880

Name: 15028
Annotation: KOG1342 Histone deacetylase complex, catalytic component RPD3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 PF00850: Hist_deacetyl" amino acids 31 to 382 (352 residues), 239 bits, see alignment E=4.4e-75

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (458 amino acids)

>mRNA_6660 KOG1342 Histone deacetylase complex, catalytic component RPD3 (Rhodosporidium toruloides IFO0880)
MTRTRRVAYVHSGELIGAADCLPANEGRAWLVHSLVDAFSLVYDSDGSREGPARAQIIEP
ERASRADLLKFHDERYIDAILGRDDGEDEAGDSSEDDESAGEEDTPSPRTFGLAGDSFAS
EPPRKRRKTEGVGLQDDCPVFPELSDYVQLVAEASTTAARILRDGEADVAINWTGGRHHA
KRGEASGFCYVNDIVLAIMELRSSPKPPPPSSSLDSSPQPSLPSRISRVLYLDIDLHHGD
GVESAFFTSPYVLTLSVHLHAPLFFPSSGALDSTGPANPKAPSRGHALNVALEPGLGEAN
FKRVWDSCVEKVAKEYGADAVVVQVGVDGMVGDPCKEWNLPLSAYGYALERVLRWNKRTL
VLGGGGYNSANAARAWAYLTSVALGRPLPLDSPIPSDLDAEFYAHFAPDFALDVPEGNMR
DQNTEETLSKVEKAFEEYAGVLHERWAKKRELKQGVQS