Protein Info for mRNA_6662 in Rhodosporidium toruloides IFO0880

Name: 15030
Annotation: HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 PF00076: RRM_1" amino acids 152 to 206 (55 residues), 20.7 bits, see alignment 3e-08 PF01585: G-patch" amino acids 743 to 784 (42 residues), 44 bits, see alignment 1.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (816 amino acids)

>mRNA_6662 HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928 (Rhodosporidium toruloides IFO0880)
MSGYDDPYRHPRPDRRDEGRFHGDRRDDRGGRGGSRRDDYEHRGYRDDRDFGGPRGGRGR
GWDEDDSRDWKRGRYEDYDRPRGDTRSPLPRDDYRQAGYPTPPPPPHNQPYPGQPAYPQQ
APHEARPSPGAPAPRGKAPELEPPSASVILLGLPAHVTDTHLRNFLEDMGASIDSTTVII
DRATGLSKRFGFAKFSSVEHARAFVDPNFPSIPWRERGGPGPDDGMRIKINYSQKTGGWR
DDQGASARLTEDQRKAEGVAAPGFYVNDGTRDIGSTPSNVILLRGLDPLTNEEEISYALS
RVGGRASQEIAKGGIKRIMIVKDRASRSSWGFAFAQFADVRLAKDVLAAAFNAQFHPTGF
RIRNNIVAASFSHENSFVPIYSTSAWSFRGEGGAQLAYWDDKGFVQPWTPPPPPKTEEVM
RGVPKAPRAVEEAKVDADMAAFFESIEADMPLMAGEELAPPTSTATAASAITTAAAAPTP
TASAPASIAPISIKPISASSAAIAGPSVATSSASPAAPASAAAVPPAPVAAAVLGRKEKK
GDLIISRKAAPNLAKWNQKSKELRSDASTGATAGAKASSGTPAAADKAKQPQSATTSSKP
ASPAPGAASIAFNDPEFEHGDPVSFQCLLCQRQFKGIDELRKHNKLSQLHKTNLDNADAL
AACATRKAASIKKHTAAAASATSTSSSDSSSKPKYVDRAAARREALGASDGSEHGQGKKR
KFDGPEPPKPLPPGPNKDGLEESNAGRKMLEKMGWTTGAGLGASGSGRVDPVQAAQFAQG
AGLGSTKGVAVGSEDGASKTYADRLREKALQRYNNS