Protein Info for mRNA_6668 in Rhodosporidium toruloides IFO0880

Name: 15036
Annotation: K03509 POLH DNA polymerase eta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 PF00817: IMS" amino acids 108 to 381 (274 residues), 141 bits, see alignment E=3e-45 PF11799: IMS_C" amino acids 467 to 596 (130 residues), 37.4 bits, see alignment E=3.9e-13

Best Hits

Predicted SEED Role

"DNA polymerase IV (EC 2.7.7.7)" in subsystem DNA repair, bacterial (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (807 amino acids)

>mRNA_6668 K03509 POLH DNA polymerase eta (Rhodosporidium toruloides IFO0880)
MGSPPIPDRSPTKRAVSPSSRPPAYRDRSPPRPHPGTRPPVAPASVPFSPPKRKTGGSIK
GKERATSEGVEGLGGDGDFPPAPVPTYRHLLGSNNGGAANPLRVIAHIDIDAAYAAMEMS
RLGIPEDQPMAVQQWNGLIAVNYPARAYGITRHETPAEALKKCPDLKLVHVQTYKNGEKE
PGYWDGAKPETHKVSLDMYRKESRKILAVFSEFCPIVEKASIDESFLDLTLPVRQLLLDR
YPALSSAPSGNLDEPLPSPSALCVQDGDIKWDELCNLIPFSGQKKEKVRRLNPDGTAAPP
SSSPTKPGAPTDLAAAPAPVAADEDSSPTPDPPEPPLTWADICLSLGASIVRDVRAAVKE
RLGYTCSAGIATNKMLAKLTSAWKKPNAQTVLRHCAVPAFLRPMPFQKIRNLGGKLGTAV
QETYQANTVGDLLTFSLAELKAKLGDSSGMWLWEIVRGLDYTEVDTKTQVKSMLSSKNFR
PSIKTYGETMHWLNILATEMHLRLTEAREDSPGLWPKTITFTHRSPTFVIRSHQIPFPFT
SNLTINYILRHAEKLFRTAIGSQTSTGPPPTADTPIGPYSNVQLSFSGLERLEEGQRGIE
GFFAAQMAKGARAQGPGEKEKKRKEQEAVGEKDGAVEEDKPAKKRKIAKGAKAADTKVKS
RSPSITVQPDGTEQLTLSSDSEDDAGPPSPRPLPTAKCNECGKKLVIPVDAKATLAKGGW
KEDEVKAALEKEKAEHADFHVAKAILEKERKANGWGSGGSTSGGAKTTSSASANGNRKKG
DKKQSKASKKEKEREKGKLTGFFGRKE