Protein Info for mRNA_6671 in Rhodosporidium toruloides IFO0880

Name: 15039
Annotation: K08331 ATG13 autophagy-related protein 13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 PF10033: ATG13" amino acids 22 to 361 (340 residues), 231.8 bits, see alignment E=5.2e-73

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1175 amino acids)

>mRNA_6671 K08331 ATG13 autophagy-related protein 13 (Rhodosporidium toruloides IFO0880)
MRCRAQISGELRRLTLPHSRRQQFYAKTCAIVSQARLTHVVDDPASSPTSLASPVPGDST
PSIGPSATGGGRRPGTATGKERGRKTNKWFNLELPDNDLFRAELRTWRNVSHLLSAAPSP
SSSAPYSAAPSSVSSSQAPIPPMVLEVVLDVSDLTPNQVLVLSDQKGRRIRVDGGRSTSG
AGAHAQSGATSPLPISPGVRSPRSTGGPNIQPPPVVLERWVLSLHPPSHPSPSSSYSSPS
PSASTAATQTELPTVYKHSILHFRTLFSLVRALPAYSLQRKLAKRRVGIGGAGLKIAVRM
RAGMEDEARDGEVGIEVPIEGSGRDAMDARERATEKVVFPGVATPFGTLSLDLTYRTNTD
FSVEEIETLLSSRFIDEDFFRPTVARYSSAREEVRPGSLPISASRAGGGFPSTSPAHASP
PAGPGKGMTGLGPLPSYGSLSSRHQYAPALPSTSPHQPHTSSPLASSPRPPNALPSPLHA
PVPVRATTSPVPLPASDSSPGPESAQSATSSRYSYPHSVAAVAGTSVPTGTPAGVVEPAF
ISLSRARAPSFSGGGGAGGIERASPSSVPRRPSMGSSGASGSPIFRPGSYFTSAAAAGGL
SSSPSYSYGPITRQQPLASTSGASPSSQLSSGISPRSPLVPQGAAAPSPRPIPAPSSSPY
AGTRAYSYSSQPPGIYGSRGSYTASRSYGRGGSSGGSGEWGGPESLGAGASGIVRPRASS
RLSFGAAGSPGVAGVRGTSRLGTMMRQHDEARARLGVAGGSAEEKKRFINEGGTPADADD
INSFLSMLDSKPDLRGLEASRSTASGEGAFAAGGAGKSGLLSKKDVDEQLRQLKTSVYGA
MGEGGESPSPPPFGLGLSGGPSPGQRASSALSGISNLRRQTSRLSIEEDPVAEQAALAAA
QRDRTTSEERSSPAEAGLAAVLEKTPRAGHRALKRDALVSPALSATSSSTAQPPPLAIEP
ALAQLDPRFLPLPTSSATSPLASPGTHPHPPFPSIGPLGAQPYPPLPYPPAGTPTSALAR
TEPITFAPYISRASRQPLNPPAGGGGSGFASTIASEHNSGAASVSSFYTQEGDGDEGVGS
SDRGEEEAVGRLELDDSPMSDDMQRRGRAWGLGLGPGEVDEEEISLASAGARHSRDPTPA
AGRLETSGGGARPFVGAGYFASRSHSRGGGSPPWM