Protein Info for mRNA_6678 in Rhodosporidium toruloides IFO0880

Name: 15046
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 169 to 184 (16 residues), see Phobius details amino acids 205 to 221 (17 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details amino acids 363 to 385 (23 residues), see Phobius details PF07690: MFS_1" amino acids 4 to 348 (345 residues), 107.3 bits, see alignment E=4.4e-35

Best Hits

KEGG orthology group: None (inferred from 47% identity to ani:AN7380.2)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>mRNA_6678 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MDKAMHLTGSQYSWTASIFYIGFLVAQEPAAYLIGRFKANQVLGVTCVLWGICVLTMMAC
KNFATAMVNRFFLGFFEAAVTPGLSLMTGMWYTRPEMPLRQTIWYSSVGWGGMIGSLMAA
GIEKRSEDSLAVPRWQLIFIVLGAITVVWGVILWFFLADGPSNAFWLRAEYRTLAVARVA
ANGVGIKSKKFRRDQMWAALLDPKAWCLTIAMFGSSVPNGILTNFSGTIIKDMGFNTFDA
ALLDCAGRSFQIISLLIAGCVTTRFANTRMLMVTCGNIICVIATALLSFLPTSQHWGRLV
SFWLVNTQSVGFTLGLVMVSSNIGGYTKKSVTSAMVFAAYCAGNMAGPQFIYANEKPRYQ
SGAYAMMAGYIAKLVAHGVLWVIMYMSNKSRDRNLGPADPKLAAAAGMDDKTESVKENPN
FRYVL