Protein Info for mRNA_6704 in Rhodosporidium toruloides IFO0880

Name: 15072
Annotation: HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details TIGR01891: amidohydrolase" amino acids 120 to 465 (346 residues), 181.8 bits, see alignment E=1.1e-57 PF01546: Peptidase_M20" amino acids 194 to 461 (268 residues), 38.8 bits, see alignment E=8.7e-14 PF07687: M20_dimer" amino acids 280 to 364 (85 residues), 33.1 bits, see alignment E=4.6e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>mRNA_6704 HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891 (Rhodosporidium toruloides IFO0880)
MISSCERRARRDLPLPLLVVLLPFPPSSLCRAFAGRTTFRRTSASSALRHFASHQLTPKL
CHPSQPFCTALALPTNPPSSPATPTSLHLSPLVQMAPTFTDLRHAINEAIQAARDDLRKV
SLSIHEKPELAWDEHHAHDVLTEYMERQSGFVVTKHAYDLPTAWTAVFTSSASSQQGEKV
PVVGFNSEMDALKGIGHACGHNLIAIAGCAAAIGVARTLERFQLPGKVVLIGTPAEEQGG
GKAVLLDRGAYDELEACLMLHPGTSGGGKHGAGNMTSAALVAMEVTYNGAPAHAGGAPEK
GRNALDAAVLAYQGISVLRQQLPKDAKVHGIISGEDKWSPNVIPDEAKLLYGIRSTTLTS
LAEVVPRVLRCFAGGALSSNTSYSIKRGHLYHEVRPAKGLSDAFKDFVEAEYGDEYRFIE
RMETGASTDFGNVCFKCPSLHPMFFLPDATPEEHPHSASYTKAAAEESAHEAAIRAASAL
SYAGLQVLLDPSLRKRMWAEWEEDMKVAQGDKALAVLDKVLPASKEGEGGKPGTFCAFDK
CACGH