Protein Info for mRNA_6706 in Rhodosporidium toruloides IFO0880

Name: 15074
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 338 to 363 (26 residues), see Phobius details amino acids 384 to 400 (17 residues), see Phobius details amino acids 412 to 433 (22 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details amino acids 497 to 516 (20 residues), see Phobius details PF00324: AA_permease" amino acids 37 to 79 (43 residues), 34.3 bits, see alignment 1.1e-12 amino acids 102 to 522 (421 residues), 392.2 bits, see alignment E=3.2e-121 PF13520: AA_permease_2" amino acids 105 to 486 (382 residues), 105 bits, see alignment E=4.5e-34

Best Hits

KEGG orthology group: None (inferred from 59% identity to scm:SCHCODRAFT_70745)

Predicted SEED Role

"Lysine-specific permease" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_6706 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MLCVSLFPPFSSPRDEADDAEPVPVGANSQQRMKPRHLQMIAVGGSIGTGLFIASGQALK
QAGPLGVLIAWVIVGVMLLKCVASHPSNDSNRSPAPPRTRSITQALGELAIVFPVSGGWS
VLAVRFVDRSFGAAVSYNYAALWCVVLPLELTAAAIAVQYWEAAAKVPVAVWITVFYVAI
IILNVFGTLGYAEEEFWASLLKLGVVVVFIIIGIVLNCGGGKNDYSTYVGGRYWRDPGPL
ADGFHGVAAVFVTAAFSFAGTELVGLAATETKDPRRSLPSAIKSTFWRVTVIYVCTLLII
GLNLPYDNPRLLGGGSDAGASPFVIMVERAGLKGLDHLINVTICISVMSVGLASCYAGSR
IICALAETGFLPRQLAYVDKSGRPLYATLFVLACGPIAYVNCSSSGETVFNWLKALTGLS
TLFGWGAICICHIRFRRAWKVQGHHVDELPFRAAAGEYGSYFGLLVIALVFIAQFYIALW
PLGGPASNPADRVQDFFLSYLAAPVFLFFLITGYAINRTWPLRASEIDIDTGRKTFYTAE
EMNAWRRERRNAPWHIRLFRMLFTY