Protein Info for mRNA_6707 in Rhodosporidium toruloides IFO0880

Name: 15075
Annotation: KOG3750 Inositol phospholipid synthesis protein, Scs3p

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 transmembrane" amino acids 989 to 1008 (20 residues), see Phobius details amino acids 1030 to 1050 (21 residues), see Phobius details amino acids 1099 to 1119 (21 residues), see Phobius details amino acids 1152 to 1165 (14 residues), see Phobius details amino acids 1240 to 1262 (23 residues), see Phobius details amino acids 1282 to 1303 (22 residues), see Phobius details amino acids 1308 to 1328 (21 residues), see Phobius details PF10497: zf-4CXXC_R1" amino acids 175 to 265 (91 residues), 50.7 bits, see alignment 1.8e-17 PF10261: Scs3p" amino acids 1082 to 1328 (247 residues), 162.3 bits, see alignment E=1.6e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>mRNA_6707 KOG3750 Inositol phospholipid synthesis protein, Scs3p (Rhodosporidium toruloides IFO0880)
MATAGPPLLATDAHTAQSTPATATPLPSDPETPLVASTPSSSPASASTTAAAVKPSALVG
AAMDTEQSVAVSEQPSALGLSKTDVKMGSLPPRETAIVGPFTLPGTAQSTSNGASGAEGK
RARTPTEQTTADPSSSVAPVANGAGEKADAAPPKKKRKSAVPKVYCHQDHSAHELSKVLR
CTAMKPAPKTKATPEGGTPMKQCSASYCERCLLNRYGENMQEILSGASTTWTCPSCRGLC
TCAACRNKREPKPEKVVEKPKENGVGMLGEMVLSGGRSAAKLARSRLSATFTESGIPAAQ
SLTNDHSSPSTSTSAPKKPKKLKKPRESSPLSMSKGKGKMEESANVDAAGLSDSGLSDLT
DSDAESSSKKKKGGKRSVGMSKTGSGSGSTAAGAGPKRAMPPKVPPPLISPTKTHPLSSV
YYPYPTLPCTDSILCRLHLREFFLRFLHLMPSLALPSSSSSKSPSPYVARVISALSDDIL
WLWTDHDSAAEVAQLRLLAGLVELLLRDRSWAIPKLQREELVDLQEEVKVAIAGVQRQQE
VYDRPWRTAGRALEKGVGKPWVGQGLEWEKNAKERREEAERVMKEKQKEKMKVEGDEDSE
LSSLSGSESEEEDEDEDEYDDGASTATTATTSTKRRMVTDDDEEIDMLASDYEEPPRAPS
PLKMKKRRKRKGARETPAEERLALMCGLIELACQTEPVRNDIQNGLDSHYRVNIDIKKDR
TSVTRETADEVRGLKEKKDALEKPPGNNASLRVQEWQDEVDKIDGEIKEAEVNGMKEGWR
IQYEFFRNDMGNRIRFQSIGKDAFGNEYYFVTPPPSSLFKNVSAATSSAFPLNRKPEDDG
KRDYPLSYCVVVHGQRPVGQSERKDVKGKAKAEDGDDEEEKPKVEVADAAPATDEWYVVS
GIDDLDTLVDWVNLAVRHAKYNVDFAHFQLEHPKTKVQGRPAPLPTPDQIKLYEQRADEM
DWNLGDKLRQFADAIRWTRELALEEKEGGGVSVITLASFSSLALKLRMSTATATRARAHT
RQAYSPRQRVLLLFTLTALAGTVYSVLNVSSAATAFRSRLPAHTLTKITESESAFPVQFS
LPFFADKRNPINQLFVKRAWAWITALFLAFLVAVFLFPSPLPAQTASSSTRTTSQTRTQA
VSTAHVAASVRRYLLASLYWFYLTQATWFGRSLGPSITFRILRSSGAVCVPSALSSEAIA
QAGQGGLHADGPHDAAAPPLVCTGAKGEYWRGGHDVSGHAFMMIHCGMFLFELVYPLLPA
LFPSLFQYASSRPPAAPKRLHPVVMVLGYIAVAMIALCWWMLLMTSLFFHSSTEKLTGVA
FGVLGWYISGM