Protein Info for mRNA_6714 in Rhodosporidium toruloides IFO0880

Name: 15082
Annotation: HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00653: BIR" amino acids 17 to 107 (91 residues), 42.8 bits, see alignment E=3.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>mRNA_6714 HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924 (Rhodosporidium toruloides IFO0880)
MPPTASSSSTLFLALSRRQTFHKSRKAASTKHLNWPYPLSGAAAKTSSIHPDRLVEAGFY
STPIDEDATVTTCFACGVVVGMWEEGEDALFRHEAAAEEAGIRCPFATVRRHAWGEEGVD
APGREKENWDEYWGDEGEWHPRGERMNEARRGTFDVGWPHDDDEGGVPTRDEVRPPPPSS
LKRLLTRWTCRRSQQQAGPSDPAQPPNQPISAPASTATGQSKAGKRATILCAFHVSSSSR
VSERADELGKQRAA