Protein Info for mRNA_6728 in Rhodosporidium toruloides IFO0880

Name: 15096
Annotation: K14309 NUP93, NIC96 nuclear pore complex protein Nup93

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 902 PF04097: Nic96" amino acids 231 to 886 (656 residues), 673.6 bits, see alignment E=1.5e-206

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (902 amino acids)

>mRNA_6728 K14309 NUP93, NIC96 nuclear pore complex protein Nup93 (Rhodosporidium toruloides IFO0880)
MATLASLLEQSQRLQTSLASSSAQPGVDLPAIQLGLDQIESQSRRIAGRSLKEAGQTGNA
AYLLASGGVNAEQLSTNINTVNVAGTFEPLVPLSDTDVEGYIRHTHEQAIISAIEEGRRA
TTSDFYRNLDVKMRRDWEKQKEKLFEELGRHQPAARPSTETPRRGGSGASGFERGSPMTP
LPATSGSLQMHSKLMRYDRVIRRLNEFRKEGFAFGLVSALGEASIGTSASDSRSAQATET
WRLLSHLVQERDVLNGEFQRTALQERQYAKAYLLADQESQDAVEVRRMIGDGARGYLEEQ
FLAYVEKTLASRPTEAALGGDPSIQNKIRAFLNVKYSKNGQWSNQALEIANNTPVWARIY
YLLRSGHAKEALAFATENESAIQKLEKSFVPYFKAWLDSPDRRLPKLLRDRFLAEYNQRI
RYLTDTSDPYKHALYKLIGRVEINRRNVPGVTQTTEDWLWFQLSLVRETEGQGEAPHEKY
GLRDLAAVLRKFGEQHFDPKGTRPLLYFQVLLLSGQFERAIAFLQQHSQYQADAVHFAIA
LAYYGLLRVSPRSKAADVELLVDGNTDAPAISFARLIHRYTRLFAHSDAAEALQYLYLIC
LNADLPSPRGEDQVALAHDYVRELVMETRQYSQLLGDVRNDGTKVPGQIERDLKLLHLAD
SRAYLLGIVKSAAMRADLEQRFSEAILLYNLAEEYDAVIAVLNVELGNSLSKPSVPENGA
RQSRGGFFADASKGTVGMAVGQEDVAQVARSILEHYDRSAGMGGKVSRRRRETCEVLMRL
KEAMGMYEQGKLEQALQTIESTNLIPLHSDLVHLIRAAEDLNSVDDAIVRNLDVVLVATM
TILYKLHQQLKDSPFGGDQSRQQKMQELRAKARSLMMFAGMLRYRLTAETYSQLMRLDTF
LH