Protein Info for mRNA_6729 in Rhodosporidium toruloides IFO0880

Name: 15097
Annotation: HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 PF01412: ArfGap" amino acids 14 to 127 (114 residues), 126 bits, see alignment E=8.1e-41 PF08226: DUF1720" amino acids 604 to 661 (58 residues), 23.6 bits, see alignment 5.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (827 amino acids)

>mRNA_6729 HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863 (Rhodosporidium toruloides IFO0880)
MSKTAADRYQRQLLLLLKEPGNDECADCKARNPRWASWDQGVFLCVQCASMHRKIGSHVT
KVKSVTLDKWTKEQVENMRQLGNVKVNSLLNPDERRHPPPPQDSGDERNSQLERFIRNKY
EYRTFAAPAASANGHSNGSSAPPPAAAPGPSFTSPSIAADSVPPLPRRPTQHASSAFDDF
SSAFGPALASTSSAQPFSPGPSLPPRPPLSHVAASAPAPIAAPTPRAKSVRFLEAPPTLI
PSPPDSDDEDDGDGYNSPPRPSLRPHARSASALPPRKGILRFRPGGNDEILVDWAALTSP
PPGVEGEDEEDVPLASLGALGMRGAQVGMAAVPAPQGGGYVPYPGMGQQQGMWAVPYGGA
PGQGQAGQGGNPPPVAPLQPQYTGSAKGYLHQQRQQQAQAQALQPQQTGTGFDAFQQLFQ
PPAASRPQQQQQQPFQQPQQQYQQPQLAQPQARTNPFHAHLFARNAYSPSPQPPSSAPSP
SPQLLQQQQQQQQQQQQSQPQQGQTAKTMNDIWADLDLLGGSSFSSAPQPPPSTFQNPSF
GNAPTPSPSLQPNSPAPAPLRPQLTGFVPSSTFGQQLARESSPFPPSSSLAVSNATAGSS
RSASPAPFEAPKPLQPQRTGFVPSSAFGQELARDFGGGSGAPSPALNAPAPAPLQPQRTG
FVPSSKFGLELAKESGGTSSGSFLGANGANGDGRSVSPAPFDFAPSPARTPQPPTANPFS
TFSSSLNAALPPSQPPPPQQQQQQQLRPNPFLQPQLTGFNPSQQLLRPGQTGYFPTPQQQ
HMPQQMQMGLQPQLTGFQGGGARPPGGGGNPFLAFGQPNGGGAGWQR