Protein Info for mRNA_6733 in Rhodosporidium toruloides IFO0880

Name: 15101
Annotation: KOG4412 26S proteasome regulatory complex, subunit PSMD10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 PF13637: Ank_4" amino acids 55 to 103 (49 residues), 26 bits, see alignment E=2.8e-09 amino acids 86 to 146 (61 residues), 31.5 bits, see alignment E=5.4e-11 PF12796: Ank_2" amino acids 55 to 111 (57 residues), 35.8 bits, see alignment E=2.5e-12 PF13606: Ank_3" amino acids 83 to 110 (28 residues), 26 bits, see alignment 1.9e-09 PF00023: Ank" amino acids 83 to 111 (29 residues), 20.6 bits, see alignment 1.2e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>mRNA_6733 KOG4412 26S proteasome regulatory complex, subunit PSMD10 (Rhodosporidium toruloides IFO0880)
MPPTPSTSSQQPSHTRTPSLSSSSHSHSHSRLRPGPLTRQEARLGITTSYPNLGLHGAAA
NGNTGLVQYALTHGQPVNSILSGVLPLHAAASSGNETVVRMLIEAGADVNSPRLSRRFTR
EGSKERGVSVGTQGSTPLHFAAANGH