Protein Info for mRNA_6767 in Rhodosporidium toruloides IFO0880

Name: 15135
Annotation: KOG0393 Ras-related small GTPase, Rho type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF00025: Arf" amino acids 49 to 216 (168 residues), 23.9 bits, see alignment E=3.8e-09 TIGR00231: small GTP-binding protein domain" amino acids 50 to 217 (168 residues), 107.5 bits, see alignment E=3.1e-35 PF08477: Roc" amino acids 52 to 165 (114 residues), 72.1 bits, see alignment E=7.4e-24 PF00071: Ras" amino acids 52 to 223 (172 residues), 165 bits, see alignment E=1.8e-52

Best Hits

Swiss-Prot: 52% identical to RHO1_ASHGO: GTP-binding protein RHO1 (RHO1) from Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)

KEGG orthology group: None (inferred from 64% identity to lbc:LACBIDRAFT_192259)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>mRNA_6767 KOG0393 Ras-related small GTPase, Rho type (Rhodosporidium toruloides IFO0880)
MNRQLDYHAHAEPSLGSPAHSYGTPSTTYTHGSTASQASQPLPVARPDAKVKLTCVGDGG
VGKTCLLIVYSQKRFPTDYIPTVFENYVLNKPYEGKIVEFALWDTAGQEEYDRLRPLSYP
ETHVLFVCFAVDYPVSLENVEDKWYPEVAHFCEDVPIILVATKTDLRADSTAVSLLKAQG
RHPVTPEEGAAVAKRIGAKYAEVSAMTGRGVEEVFDLALREAMKGTSLIGRSIKRRKAKC
TVL