Protein Info for mRNA_6768 in Rhodosporidium toruloides IFO0880

Name: 15136
Annotation: HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1160 PF08573: SAE2" amino acids 1039 to 1122 (84 residues), 29.5 bits, see alignment 7.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1160 amino acids)

>mRNA_6768 HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573 (Rhodosporidium toruloides IFO0880)
MATHGAEAQPDLAAILRTAHDSLAASLEADVNDREARLTSVVNVLGFSTLDDLEDFVYLH
GGGKVVPAAQRDTLPLDETQTQFSETRRTKRNEERRAENATLKRDLATVRAELQWARSEA
AKAKEEKEELVKDKRRLLNTVESLRTATGGDAAALARPMSSLSQAGMSPTAELQACWDEV
ESLQATVAQLEEELASAQTLCDEQAVELRDLRDEVVNLQQEKTRAEALEAELLRLRERIS
SLVPAILSGGPIPATPTFSAITPSGATIRPAPTSSLPPLRLSNAAADPSPSVRPASTAAG
PSATTPRPTQRNEQVPSETDDVAPDEPPQPSTSRQPAAPAPPQPGGAEAPPPATQPAALP
HPRVAAISTAPSSSAASASPTASLSSRLQNKIRLYPSMFAAFTASRTTLLGELARKKELE
AVLAGFPTHVSERFLARAGPAPAVDIDRYSEPAALPTDPAERKEMATSGRLEIVYEDLRI
KELEVSKTAANVQAWVEKLAEYVDSYTLQLQEKEAEEAAADAKGKKRAAPAEAGMPAASG
MAGQPVKKRRKVVADVTPATSATLASSIAGTPVPRPSLAKPQSPRPSPRKSPRKSPRHSP
YVSPRKQLLVGGTTTPGVAAEASPSTSTKKRRWNLVSPKKKDLSGVKKQLWTRRGDADGA
TVAADSPAATSGTQPPLLPSSPAVKRINSEGDREASTYEPEPDTLRTELSSQTGRRSSTT
AGRSSSPRKPVLRRSISVASSSALQATRRHLLVAAVDENDPFVDRGPAKAPRPPSPAGAL
PLQPSPRSRLSQTASRKGKSRTLVPTSPASRAATPSPLPSPSPSPSKGLSMPPSAQFSSR
RLPMQDSPPLRSPFAIKTGDAARQALIPDSDDEDKACARELRFFNNLGTPPLPRAPTKRQ
NPSQKTAEAASGSRGTVARSQRMKVESQVVPLSPSPKKRKQRKAASKTKAVKTEPGAQPA
TPTKEVFGRERWLDLDQSTPDYPEDPDDEQSRKFWIERTRLKRRVKLQKDKQDSAKKAGS
SKRVLEINPERNKGEKQFFKEVVRNKEERSKMLAEPCAECTAYFDRSGTENTCNHRRQPA
AATYLDERAAASEKRLQAIGRHRVQQPTVEDPPQYWEFGIPTTQDAEKLNQEARKKKERA
RALQEAEADTPNGLYRWRDA