Protein Info for mRNA_6770 in Rhodosporidium toruloides IFO0880

Name: 15138
Annotation: K03350 APC3, CDC27 anaphase-promoting complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 921 PF13181: TPR_8" amino acids 757 to 789 (33 residues), 17.9 bits, see alignment (E = 1.4e-06) PF00515: TPR_1" amino acids 757 to 787 (31 residues), 31.1 bits, see alignment (E = 7.5e-11) PF07719: TPR_2" amino acids 757 to 788 (32 residues), 26.2 bits, see alignment (E = 2.7e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (921 amino acids)

>mRNA_6770 K03350 APC3, CDC27 anaphase-promoting complex subunit 3 (Rhodosporidium toruloides IFO0880)
MAARRQAAQQQQQQQLQPPATLAHKSAILRQLASDALAYSPQTALFYAERLHALDATAEP
AAHLLAQTQIAARRHHDALWTLRQPVSFAPTLAPTPSDQLDDPFGAAAGAGAAAARRWPQ
PSTSAGRLTRPAVECSVRCARLYAEACAELKRDKEGREALAFVLQPGVPLAPSPPPLDNP
DVAANSDSSIAAAFPRADESTVVELELARLARMGGDYERAVVGLRKVVAKLPTCWEAVEA
LCLLGHPPDVDTLYPIPVRQRATTATPPVSAGSTVTHAPQRPLALSNSNPPPLGPSQTAV
VNTVLPLTGAPGRLRNGGGPIGEGGLFTPTEIQVKPGGLFGVNGKGKGKEVQGLFAAAGA
GAPPPLRRTGSGRYADMSMDTTGVEDSFDASFYPGVGNLPFSTNNPAARSNGAAGSLFTP
PTATLPTATAPGVKRTRAGNVAPASTAATANDDDSNRTAANGRRILRGDGKVRRGDASAT
ATAPATRRSSRLSSNAASTAMAVSRSQSSANGRSGVTAAGTGDKKRKRGATGPSVLSDVG
SDAAFSHSSSPAPSSPGGSTAHPQQPSIASVLDPAREEAEDYVLSILRAFATAARAAALY
AQKEVVQALATLPSEQARTWRALVALAKAHFEMLSYDKAEKAFRQARHVAPYLVDGMELY
STTLWHLRKSTELSFLAQELMVADPRHPASWIASGNVFSHIEDHASALRCFKRAVQLDDG
CVYAYTLSGHECVMLEEWERALGFFREAVRRDVLHYNAWFGLGNVYLKTGKYSLAEYHFR
RALDINRANATLVCCVGTVLEKLHRWKEAYEMYERAAVLAPESPLVRFKRVRLLVKLQHF
EAAKSDLLALQHQAPTEPNVHFLLGQLYKAEGKRADMLRHFAQAQDLEPRLASLIRQVIE
RSDGPGGMEVDERSDATGLSA