Protein Info for mRNA_6782 in Rhodosporidium toruloides IFO0880

Name: 15150
Annotation: HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 transmembrane" amino acids 721 to 740 (20 residues), see Phobius details PF12949: HeH" amino acids 15 to 48 (34 residues), 50.4 bits, see alignment (E = 1.4e-17) PF09402: MSC" amino acids 487 to 836 (350 residues), 309.3 bits, see alignment E=4.2e-96

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (875 amino acids)

>mRNA_6782 HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949 (Rhodosporidium toruloides IFO0880)
MTTPPAYLLPDYDAAKAKVAELRGILLAHDVPYQSNAKKPELVRLFQKHVLPQAEALLDQ
MRTVRASDDGVLDGESQGSSLRELDTDYEQEAAGDEEADVRSAVRKKGKARAGTSTRARK
SGSTKSGKGKGRAKEVDETTGTETEDSAMEQEEEEDAAPPLKKRAAKGRKSVRLPSPPDE
MEVDEEGTVQLETVEYEAPRDYEAPLRGSDDDDLPAVSPRKRKAQDEGPATPRLSDLTAP
SKRKSRLSLGAGGDGNFSDFNPFQSGGEETPQRDTKRRKSSLGPARLQEEKQERSRLSPR
KSMPALSAHRREAGTAGDWATPGRSERPFLAGTPRRTEEEEVFDEMPEPEAPAVPSTSRS
PARARHSLGGALPSASGSARGTPVGVQYMVPVNKVKTSPPQMAALLREREQGSTASPAAG
RVAGPSPYGSRRKSSSPVEEIVQPRQRQVVGKGRRLSDQNAIAVKPASRSMPTVDLSGMG
RVAKWALAALLVTYVLWWREEKLAAGFCDTNSSTNALVASRHTSLAAPLPDLPPSLLHFA
DHLHLRPSCTPCPAHGHCVDGAFVGCTVDYVPRQHPLRLGGLIPISPACVPDTEKLMMVA
MQASKASRLLRQRRGEVICKGLEKHRRKQGQAEAWIYGLNAEAVLAALRSENERAGRPFA
EDVLEEVNRIALRDLEAHGEVVVWQDENGPDDYWYAAKTAEMSLSCRARLAAIQSAKRHK
SALAGFVGFLSVLAWLCSKFRSRRADAEKVRQLVQVALRQLQQQERAHYADPVLIPFPHV
VPSHLRDLILQDEHSPSRRAALWKGVEKVVEGNANVRVMSVEQNGEEMRGWLWTGPTGRI
EVGLGEEREERPQMVEGSRAFPSLQQSSPVKLQEI