Protein Info for mRNA_6788 in Rhodosporidium toruloides IFO0880

Name: 15156
Annotation: K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 994 transmembrane" amino acids 62 to 80 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 291 to 319 (29 residues), see Phobius details amino acids 754 to 775 (22 residues), see Phobius details amino acids 783 to 802 (20 residues), see Phobius details amino acids 825 to 850 (26 residues), see Phobius details amino acids 889 to 910 (22 residues), see Phobius details amino acids 924 to 950 (27 residues), see Phobius details amino acids 962 to 984 (23 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 6 to 73 (68 residues), 70.9 bits, see alignment 2e-23 TIGR01116: calcium-translocating P-type ATPase, SERCA-type" amino acids 54 to 848 (795 residues), 952.4 bits, see alignment E=1.9e-290 PF00122: E1-E2_ATPase" amino acids 123 to 327 (205 residues), 179 bits, see alignment E=2.4e-56 TIGR01494: HAD ATPase, P-type, family IC" amino acids 221 to 369 (149 residues), 90.8 bits, see alignment E=6.9e-30 amino acids 666 to 776 (111 residues), 109.9 bits, see alignment E=1.1e-35 PF00702: Hydrolase" amino acids 344 to 707 (364 residues), 81.6 bits, see alignment E=3.6e-26 PF13246: Cation_ATPase" amino acids 415 to 522 (108 residues), 71.1 bits, see alignment E=2.4e-23 PF08282: Hydrolase_3" amino acids 691 to 737 (47 residues), 22.5 bits, see alignment 3.2e-08 PF00689: Cation_ATPase_C" amino acids 777 to 980 (204 residues), 159.7 bits, see alignment E=2.4e-50

Best Hits

KEGG orthology group: K05853, Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum [EC: 3.6.3.8] (inferred from 70% identity to cci:CC1G_10813)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.8

Use Curated BLAST to search for 3.6.3.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (994 amino acids)

>mRNA_6788 K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum (Rhodosporidium toruloides IFO0880)
MAALAHTQTADSLAQQLHVALDTGLTASQVEENQRKYGKNVLPEEPSPPLWELILEQFKD
QLVLILLASAGISLVLAYLEEGEDKATAYVEPIVILAILIANAWVGVVQETNAEKAIEAL
MEYSPDEAKVIRDGRVQKIHAVDLVPGDVISLAVGDKVPADSRVVSISSASFTVDQALLT
GESYSVSKSTGVVKDEKAVKQDMVNMLFSGTTVVTGKAQALVVATGTQTAIGDIHTSITS
QISEKTPLKQKVDDFGEQLAKVIAVICVLVWVVNFRNFNDPSHGGLVKGAIYYFKIAVAL
AVAAIPEGLPAVITTCLALGTKKMARKNAIVRSLPSVETLGSTNVICSDKTGTLTTNQMS
VARVSVIENGALKQFEVEGTTYAPTGSLLKANGAKVDSQTLALSAFTRLAEIASLCNDAK
IAYSEKDNSYASVGEPTEAALRVLVEKIGSASVNSSLSSLSAQARVNAVNTDIESRFARL
LTFEFSRDRKSMSVLVREKNASTAALFVKGAPESVLERCDFIGTGASRQPLTQQLRDEIN
KTVLSYGSQGLRTLALAYVDDVDPDADHYHTDSSSKYIAFEQKMTFAGLVGMLDPPRPEV
RGAIEKCKTAGVRVVVITGDNKNTAETICRQIGVFGDSEDLTGKSYTGKEFDALSQQDKV
TAVLNASLFSRTEPGHKLQIVELLQEQGLVCAMTGDGVNDAPALRRAAIGIAMGSGTDVA
KLASDMVLADDNFASIEAAIEEGRSIYENTKQFIRYLISSNIGEVVSIFLTVLLGMPEAL
LSVQLLWVNLVTDGLPATALGFNPPDHSIMRRPPRSAKEPLISGWLFFRYLIIGTYVGCA
TVFGYAWWFMFYKGGPQISWYQLTHFHKCSELFPSIGCDMFANEMAKRATTISLSILVVI
EMFNALNSLAENESLLTLPPWRNMYLVGAIALSMALHFMILYVPFFATLFQITPLNLDEW
KAVVAISFPVILIDEALKLVSNAFVAPPAKQKTE