Protein Info for mRNA_6795 in Rhodosporidium toruloides IFO0880
Name: 15163
Annotation: KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1427 amino acids)
>mRNA_6795 KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1 (Rhodosporidium toruloides IFO0880) MAAGELVPDTPTSTARAAHESAQEDLHSQSYLLAAIGRGGARLPSSPGARTSDADSSLSE ATQQRLSAIQAAAQAGDGEEDELELNQDEGDLSTVADSQMPPRARSPDGNTSRSRTNAAL RRHGSQPALAPPKYDDGYLGETMAESLGETSWERDKSRRSSDRSGLSQAAAQDEDVLGDL NDETTTGEVSMDLTRADGRLLSRRVQKLADADDTVPSQQITEDSQSLRPTESQKENPSPL RATSRPASSAAFGSHSPQVNMHDGSGPSSSPAVARELLQRSPAKKAFVEEPASSADPDLS PSVLLSPARLAKLNATSTPAFANAPPPAPVTAARTLPNLELSLASDPPPAAVQAARPLAR SATTGVDLSLFASSAAMKAPVQAKKKVRREAWDGISQSTDEASLSLRTNGEEQSLELPQT VVHVDEAEAEASRPEKEEERGDDMDVDESLPATVPHASYADESPSNGTTTSEQQSLRPAA IAQADQASSLDFAPRRRPDQPALFTRATDSASSSPSLTPARDEAAPRVTFDDKAGGKRLT DISDLQSSFEAPTQFDVAATQKEYDAEKLGSSLRSQDVSFDNAERWHNPFQHDTSTNSRE QSTSTSRPLPGRELRRQPPPPSPVRDGKAPVTDELFPLEAIPFDTTVAGDETLQLPVPPA DLDISTLPQPTQNQPIPESSPDVPLAKRPRFNSPVQESRASGSSSSHKQQTVSSNGFVPD SDGPTPPLTSTSKSVKPNQRRNPPLVAKQNGRTRQQAAEESVEEEDEEEAEEAPVRGKGK GRAAAKAAKPAASKPAPSRKGKERAAAPQESVDELDLLAETNYSVPPAPKTAKSTRTTRR AATATPASTKTADKGKRRASETPSVEPEPARKRRRSETSFIGVEIPSPAKSRTSTPKKVT KKAPAKPAATAKKARGGRTSTRSADMAVSPSPEPAAPVAGPSRLRFQSVEGDSSRQAASP APTETRSTTSTGDRAPKSRLPDTAPFSRVLALWRDNCLFYPATVTAVSGGLFHVLFDDNS KGKLHPHEIRRCELSVGDLIYYRGDEVDTETQAQALDGEVRVLRVERDGEAVTGSLEADD IIIATSTRDEEGRVHRLRVEAVCVQPYRSQQLDDRRLTADELARFEGREGVVLQSLPLLK PPKPVESKPFERNQQSQRLFSRTAFIVTYASSKTTGGGPSQADREAFVEELEGHGATVIE WQHLFTVNAPAKSTDSPELFFPMIDFEEIEEVFLLADRACTTVKYLVALALGVPCLSREF PLQCIKECVRLDWRSFLLTSGHVQQLGTYGAGGQLRALLKQSFGLPSLVETFEKGGVFKD RSFLVVLKKAGKSKEEKASQNNHAYTLLSLLTCASARHVHFVSSPSDALSASGYDHVFLD DDSASLTLPNALKNHKGLVNIVWVKQCLMAGRLLPSARMREVQVEEQ