Protein Info for mRNA_6800 in Rhodosporidium toruloides IFO0880

Name: 15168
Annotation: K04709 LAG1 Acyl-CoA-dependent ceramide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 40 to 56 (17 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 146 to 163 (18 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 325 to 348 (24 residues), see Phobius details PF08390: TRAM1" amino acids 79 to 136 (58 residues), 61.1 bits, see alignment E=6.5e-21 PF03798: TRAM_LAG1_CLN8" amino acids 141 to 345 (205 residues), 148.5 bits, see alignment E=2.1e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>mRNA_6800 K04709 LAG1 Acyl-CoA-dependent ceramide synthase (Rhodosporidium toruloides IFO0880)
MAAGAHAVRAAPPPKSKALFARKRGAQGGGVVDFVLRRQLELSATVLAVILAGNLLNPPE
YHLSTDLTPSPSWHLRSPFSRFLFLSFRKPDTQLYYKGRDDAFLIAWWVIAFCFLREAMM
RWVFVPVAKMCGVRSRRALIRFSEQGWSLAYYTCSWTLGLYINQTSPYRSLNTLHFWKGY
PHDALPALTKWYYLVQTAFYIQQMIVINLEARRKDYYQMFAHHIITSLLMMFSYVLNWTR
IGNTILCTMDLVDIFLPLAKLFKYTGNHRASDATFAIFLISWIVTRHIIFGRIIWSVVVE
PQTVLDYDWRSEDGYYFSRNTQRCFTALLLALQLLICLWLAMILRVLWNMFLGASAEDTR
SDDEDEDEYSSSSDGGDKAGRRRVPNGAHVNGNGLHRVETRKER