Protein Info for mRNA_6807 in Rhodosporidium toruloides IFO0880

Name: 15175
Annotation: HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1214 PF01465: GRIP" amino acids 1166 to 1206 (41 residues), 49.7 bits, see alignment (E = 1.4e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1214 amino acids)

>mRNA_6807 HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755 (Rhodosporidium toruloides IFO0880)
MFGGLNLKSLSDKLNESLHDLENTLAQGLPSTSTAANPTSPPRQQPTRTASSPAASPSSS
RTRPSLDSIATRAQSVAGGLGNLSSPLSPTAIVNAQQSASQLAEGALSSLRASLRKGRQS
LDTVARASLDGGRSSSDSGRPAAVPASPSKREGSIKEEELISIKKEEDAPEEKKPAVEEQ
LVDIGEATSAPAPPAPSHAPLVDLSEPPASTTLRATPAASASLAPPDRPAPLDRKPSSLL
DPPTPEEGEDDDAWGVGSVGIRTPAIPQGETPAEEEEVKEEEAEAKADDAEKEATEAAPP
TAETEPNAASAAPLNEQEVVPLQDETSAPRTTEAATIEPASIAVGDEASTAAGPETDAVV
EQKEEEQLAPVAAAVEEVAPVAEEPTTAPAVADEPSALSTNEQSETATPAAYEPEPAVHP
PPIAAADPAESNEPSETAVIDPIVLNKPVAASPTETEPATAPPSTEPTHSPPPNSIPEPS
SATPEHSQTADADEQTVAASAKADVEEQSGDPQAEQEKVGLDDAAETKGDAEVREADIAA
RFAKAEEPDRLIEALEPEGTVEKAVEAPREEAVKEVGAKNEDAGAPAHTTAAPVDEPSPP
AVPSKPSSDDRLAGLKASLDKVVASLTPLGSVDDVQAFEDELRNMKSKAEMAVKEVARLT
GQLDRQKESFEELRETHRLEHKSQQDEIDSLREQLSTKGAKLTAAESAAAQTRAEIAKAS
EEYDKLKIVAKEEEEKRVKALSLLRALRQKLVKNEKEKEESDKELERLRAAEQQAQETLK
TDRSRFDSEIVALRSAQEQQINKLKQSFERETAKLKEQFDRDSTNKRGQFELDAITAKAQ
QAKELAAKDARIKQLETTVRELTTARDSVFGQLQLRQAEIESSETNQEALKTRAAELEYE
LSETKDRIAAMQDELDSVRRHRQDSARDEGTTRRLLEEAEARHVVKVRDLEARAAQLEKD
RRETEDEMGRNLQERLKEVERLRAALAQKDVDFAESVQNRQKREKEIEEAQKARADLEAR
LKKVEAALDRVREESLILQQGEAAAKEELNDRVQRMSELEARLEEVQTRESNLRSTNKTL
REELRKLQSGVLLSEKQRHPGVGYFSSFSQQNAPSVASLPAARASTTSLTSTIGGPASPP
LSASSPPASISSGLAGGAKANGDEALNFEYIRNILLQFLEKPEMRPHLIQVLGVILHFTP
AELRRLAAKSSVPH