Protein Info for mRNA_6811 in Rhodosporidium toruloides IFO0880

Name: 15179
Annotation: K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01370: Epimerase" amino acids 57 to 211 (155 residues), 40.6 bits, see alignment E=6.4e-14 PF04321: RmlD_sub_bind" amino acids 57 to 213 (157 residues), 28.5 bits, see alignment E=2.6e-10 PF05368: NmrA" amino acids 57 to 281 (225 residues), 52.4 bits, see alignment E=1.6e-17 PF01073: 3Beta_HSD" amino acids 59 to 172 (114 residues), 36.4 bits, see alignment E=9.4e-13 PF13460: NAD_binding_10" amino acids 61 to 211 (151 residues), 56.6 bits, see alignment E=1e-18

Best Hits

Swiss-Prot: 49% identical to NDUA9_NEUCR: NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial (nuo40) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K03953, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 [EC: 1.6.5.3 1.6.99.3] (inferred from 61% identity to uma:UM00381.1)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3, 1.6.99.3

Use Curated BLAST to search for 1.6.5.3 or 1.6.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>mRNA_6811 K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9 (Rhodosporidium toruloides IFO0880)
MAQRIFSSAAAAAQPLRQSVPLQTRGLGQLVAAPNQPGRVFLGSGPGGRHSTTGHVVTVF
GATSFLGRYLVSKLAKAGTQVVVPYRDADEARHLKVCGDLGQVVPMEWDLNNDTQIEECL
RHSDTVYNLVGRDYTTKNFNFQDVNVSGARRIARIAAQNGVSRFVHVSHLNADPNSASAF
YRTKFEGEQAVKEAFGSDATIVKPGWMFGHEDRLLNTLAVSPSVFRVNHGETKIAPVHVL
DVASALNTMYTAASTLGETYALPGPRTYTFEQLLQLVEGYTLKKLQGPNLPRPLLSLMAR
AWDLVWWPTLSPDEVVRRFIDDLPVAPGVKGFADLGIEPDVLEDIAIVYLRRYRASAYAD
LPIQHGGIPLRKQQYHTLD