Protein Info for mRNA_6824 in Rhodosporidium toruloides IFO0880

Name: 15192
Annotation: K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 TIGR01242: 26S proteasome subunit P45 family" amino acids 108 to 432 (325 residues), 414.8 bits, see alignment E=1.7e-128 PF07728: AAA_5" amino acids 227 to 296 (70 residues), 21.7 bits, see alignment E=3.4e-08 PF00004: AAA" amino acids 228 to 360 (133 residues), 140.6 bits, see alignment E=8.5e-45 PF17862: AAA_lid_3" amino acids 385 to 426 (42 residues), 35.5 bits, see alignment 1.4e-12

Best Hits

KEGG orthology group: K03061, 26S proteasome regulatory subunit T1 (inferred from 82% identity to cci:CC1G_13955)

Predicted SEED Role

"proteasome regulatory subunit Rpt1" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>mRNA_6824 K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1 (Rhodosporidium toruloides IFO0880)
MPPRADWEKYKADPTKQEEAKIDPLDDEDIQILRTYGQGPYAKRLKDVDAEIKEVQKRIN
DKMGVKELATGLAPPNLWDLAADKQRMGEEQPLQVARCTKIIRLPEDASPPALAPGQKPN
ADEQDKYVINVKQIAKFVVALGDRVAPTDIEEGMRVGVDRQDYKIMIPLPPKIDASVTMM
QVEEKPDVTYQDVGGCKEQIEKLREVVETPLLTPERFVELGIDPPKGVMLYGPPGTGKTL
CARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARSKKACIIFFDEIDAIGGAR
FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRIDRRVEFS
LPDNEGRAHILRIHARSMAVERNIRFDLIARLCPNSTGAELRSVCTEAGMFAIRQRRKIA
TEKDFLDAVEKVIRSGQKFSSTSLYANYQ