Protein Info for mRNA_6830 in Rhodosporidium toruloides IFO0880

Name: 15198
Annotation: K07893 RAB6A Ras-related protein Rab-6A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF00025: Arf" amino acids 98 to 259 (162 residues), 58.7 bits, see alignment E=1.8e-19 TIGR00231: small GTP-binding protein domain" amino acids 99 to 257 (159 residues), 99.1 bits, see alignment E=1.2e-32 PF00071: Ras" amino acids 102 to 260 (159 residues), 200.1 bits, see alignment E=6.5e-63 PF09439: SRPRB" amino acids 102 to 240 (139 residues), 24.8 bits, see alignment E=4.6e-09 PF08477: Roc" amino acids 102 to 217 (116 residues), 125.2 bits, see alignment E=5.9e-40 PF04670: Gtr1_RagA" amino acids 102 to 234 (133 residues), 20.8 bits, see alignment E=7.8e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>mRNA_6830 K07893 RAB6A Ras-related protein Rab-6A (Rhodosporidium toruloides IFO0880)
MSNEPETAVDASANEPVAESTPVDAAAPAHEGDAGAPETAAEEAQDAGEAQQENKEEDSA
PAAATETPAPAAAVATTPAAPATTSAAPATSEFAHAALKKFKLVFLGEQSVGKTSLITRF
MYDTFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY
DITNRTSFMNTSKWVDDVRSERGNDVIIVLVGNKTDLNDKRQVTTDEAEQKAKELNVMFI
ETSAKAGHNVKTLFRKIAQALPGMEREGEGQGGANQMIDVSVTPTNTTGNEGGCSC