Protein Info for mRNA_6834 in Rhodosporidium toruloides IFO0880

Name: 15202
Annotation: KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 76 to 96 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 159 to 182 (24 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details amino acids 263 to 285 (23 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details PF01569: PAP2" amino acids 162 to 313 (152 residues), 89.9 bits, see alignment E=6.4e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>mRNA_6834 KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family (Rhodosporidium toruloides IFO0880)
MPLFNHSSAAQPTPATHEKPLSSSHTGPNSPATSAHPINNAAGATGATGVDVGDQNGTGK
AWIYQRPSVGEWFKMYWVDLLTMAAIGAVGLGVYFADPAPTRNFPITFSDGEIVYPEVAY
PLRKNIIPIWAAAMIAFFVPFVSFLLVQIRVRCFEDLNTATFGVLYSLITAACFQVFIKW
LIGGLRPHFLAVCKPVIPAGLVGTGFQNIMFDRSVCTGDAKEINDSLESMPSGHSTAAWA
GLLFLSLYLNGKLKVFSDYRPQFWKMIAFFAPLLGAFLISGSLTIDEFHHWYDVLVGGLI
GSSCALAAYRMSYASILDFRFNHLPLPRTPPSSTAHHNAHFTPRFPYTLEAVNGQARDSG
VPVFAGQWREMGGMGGAGVQGAPGDAVKGAVGSGMGRAERMV