Protein Info for mRNA_6846 in Rhodosporidium toruloides IFO0880

Name: 15214
Annotation: K02603 ORC1 origin recognition complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 924 PF13191: AAA_16" amino acids 528 to 667 (140 residues), 42.5 bits, see alignment E=1.9e-14 PF13401: AAA_22" amino acids 550 to 665 (116 residues), 30.8 bits, see alignment E=6.5e-11 PF09848: DUF2075" amino acids 554 to 658 (105 residues), 20.3 bits, see alignment E=6e-08 PF00004: AAA" amino acids 554 to 699 (146 residues), 59.9 bits, see alignment E=7.6e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (924 amino acids)

>mRNA_6846 K02603 ORC1 origin recognition complex subunit 1 (Rhodosporidium toruloides IFO0880)
MPPAHTDSWPSTTHADSPSAPATPSKRASRSSRISNDTDYRSFTRSTSVGGTETTVEFRV
GDTVVVGADAKLKQKFLAPPSWQVETKGKGKGKGKKGKGKGKKRSQDDEEEEEPEGWRHE
DGLNAGDKVAVITRLFEDVRGRKMALVRWFARPEAVWGPDGPDEDDDAGDVLPYELYFTS
DSTHLEESRVVRQRAAANPFSSPAGSPSKRSRNAGSTSAVSSPSRTNSAFVSSSAVFRTP
QHSDAVPVSTILSHAEIFSPSSLPDPSNPSITASQQSPIPTFLCRRVYDVKPIPGASFWG
EIDWDAHRLKAVEWYDSTMGMVERKEGGRERDVAQDGWDVEAVMEDSESESEDEEERERR
RRRAEKARLTRERKEKEREERRVANGAVSESEGSSDEEDEEDAFNDRDSASSDSDSGSEG
DASEEGSASDDDRASRTPTKRKPLRERQPSASSSRKTAATRLKRTRPATSAATGRAAKRR
KFASSGKTSSDSSHNALPPLLQSAHLASLTPFERAKALLHVSATPESLPCREDQREQIRQ
FIGDAVLGRSGGCLYVHGVPGTGKTATVHSVVRELQNDEDMDGFAFVEINGMKISEPMAA
FSHLWAALAPPDQQQSGRKVSPKAALAALENHFANPDPARKTTVVLVDELDQMLTKRQDV
LYNFFNWPHVPHSRLVVLAVANTMDLPERELSGKIRSRLGTNRIPFQPYTWTELKRILEA
RLALVDASSAAKSKSTPLFDDVALQKIAKSVAGISGDARKALDVARRTLDRVALRLSKEG
KSLDELEQGEVKCSIQDATQAYNDMTRQGPAAFVRKLSTQMKVLLLAVAQCVRRAGVPEV
ELDTVLTWHLDFLRQTSLCPTPSSAPSKTELVALLSQLHALRLITAESQRLDVFQRVRPA
VDEGDLFAALREDEVLKAHVPKVL