Protein Info for mRNA_6862 in Rhodosporidium toruloides IFO0880

Name: 15230
Annotation: KOG0754 Mitochondrial oxodicarboxylate carrier protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 transmembrane" amino acids 49 to 71 (23 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 333 to 350 (18 residues), see Phobius details PF00153: Mito_carr" amino acids 183 to 259 (77 residues), 33.9 bits, see alignment E=1.2e-12 amino acids 269 to 354 (86 residues), 29.3 bits, see alignment E=3.2e-11

Best Hits

KEGG orthology group: None (inferred from 62% identity to lbc:LACBIDRAFT_191712)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>mRNA_6862 KOG0754 Mitochondrial oxodicarboxylate carrier protein (Rhodosporidium toruloides IFO0880)
MATSTAVADERQPLLRPARSPPPPSSSHDSDDSDDDSPDPEPASPRRRLLRSVLLWSAVS
ALTIYLIVQAFRKGGGEFDWKGALKKAGGGGLAGAMAMVIQVLTMMPLRTVMNYQYRFGT
TTTEASRKLYEEGGWGRYYAGLAPALVQGPVARFGDTASNAGILALLSSNPFLSRLPSPL
KTAFASLVGALFRMVLMPVDTLKTTMQAQGSSNALQILKERVKTYGPGTLWAGAWATAAA
NFVGSWPWFATYNALSTYLPPAPPTDIWAKLGRQAFIGFVSSVVSDTCSNSLRVIKTYRQ
VSRKKVGYRKAAQRIMRTEGARGLFGRGLKTRILANGLQGLLFSVLWKAFAELIEGKGKK
GGDV