Protein Info for mRNA_6867 in Rhodosporidium toruloides IFO0880

Name: 15235
Annotation: KOG4121 Nuclear pore complex, Nup133 component (sc Nup133)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 transmembrane" amino acids 253 to 274 (22 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details PF03177: Nucleoporin_C" amino acids 441 to 671 (231 residues), 77.7 bits, see alignment E=4.6e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (700 amino acids)

>mRNA_6867 KOG4121 Nuclear pore complex, Nup133 component (sc Nup133) (Rhodosporidium toruloides IFO0880)
MRPATYIFPVPPQAPFPPNVAAYSPLSFASLVPSPSQTVQQAGQREPGLVVVSNVGTARF
WESVSLSLSGVDRFKSASCPLNEGELVKDLKLVSPTTYLLSTTQSRLFAINIISHAGRAD
HSVRHLERSLGWAGSVWSAVFGSKTVDPRAGILALALSQPKLNEAGRTAYAVTEKNVQVW
KVPVRSEGGERLLIEQDIFAGILEALAGEKIGNEQWALNEGRVEIVDAAVTASGHLAVLI
CHVHVGTASDSLSFAIVMLEVGTSANSVAVAGLTHLTYQSRPDPRPLSTPRLSLGSGEIA
FFVFADAVVIASIAHDSTFEEAFPLRKNTDRFLGLSMPSYLPSPPATIETLSLLTSLPSI
FSVSVSPPQGHRLIAPGTEGYKTRRLQTRIEQAVFFGTSEAQSPLAFDLQPDFEGDLAVA
AVAVSSGILASNSANMPLILDLRAQLADRVHRAKVLIEYINVNGLLGKIPQYARQQLSWD
AERLAAAVALWHNQNARLGSGSSILSDAILQYMDEIGEGFGEDPLRLFFRTKVSGLGNVL
EEVTRRAKAIADSTQTSAEEKSLHLREANEAVLLAFNAVARHRKETSSHYGLDSSSIPSE
PWSSRPLLLDSLQWHFEATYSLLRERVRELGARVDEEQARFGRGADMSEKQAVQAERLTQ
MAGVAECMCLRSKCCTVRLKMCQLRTDLLATAGDVAFARC