Protein Info for mRNA_6879 in Rhodosporidium toruloides IFO0880

Name: 15247
Annotation: KOG0293 WD40 repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 PF00400: WD40" amino acids 239 to 274 (36 residues), 23.9 bits, see alignment 9.1e-09 amino acids 283 to 316 (34 residues), 12.3 bits, see alignment (E = 4e-05) amino acids 320 to 358 (39 residues), 18.8 bits, see alignment 3.7e-07 amino acids 538 to 578 (41 residues), 19.6 bits, see alignment 2e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>mRNA_6879 KOG0293 WD40 repeat-containing protein (Rhodosporidium toruloides IFO0880)
MNGGKSVSNGSGGLDAMQYEGEEGFVPLWEGSNLDRREFVRLALQAFQDMGYNGTAEALQ
AESGFSLEDPSIQQFRQGVLDGTWDLVERLLSQLPIEPTVDLTPIKFAIRQQKFLEAMEL
KQTKKALFVLRNELSPLNFDPNKLHFLSSLIMCSTPDDLRQRAGWDGAGGTSRQQLLIHL
QDCISPSVMLPQHRLATLLGQAQAYQQRHHAVPPAPSEPFSLLVDADPRDVGAFPTVPAH
VLQEHTDEVWRLEWSHNGEYLASAGKDRTAIIWSARNGFALDKILRDHAEPISYLAWSPD
DSILLTTAESIIKMWNTETGTCIATLARHEYTIGAVAWLPDGRGFVSGGMDSKIFFWDLA
GNVTAQLGRSPSRILDLAITPDGSKLICVGRADTTEPHLVPSRLPSRSQTPANANANGNG
QGQMSLGARHEKRISVFRLPVGGAEMGGESQLIYELVQPQELSSIAVTRDSRYAIVSHAP
KEILYLKLEDGTILRRFEGHDQGDFVVRPCFGGSTENFILSGSRDGKVYVYHRDTGPLLH
VLVGHGSKTVNAVGWNPTSKHGAMWASCGDDGNVVVWSMPAGEDGEAMRRKGPRLRPLDR
SMAIA