Protein Info for mRNA_6894 in Rhodosporidium toruloides IFO0880

Name: 15262
Annotation: K14326 UPF1, RENT1 regulator of nonsense transcripts 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 802 PF09416: UPF1_Zn_bind" amino acids 112 to 263 (152 residues), 241.4 bits, see alignment E=1.2e-75 PF18141: DUF5599" amino acids 315 to 406 (92 residues), 119.9 bits, see alignment E=1.4e-38 PF13604: AAA_30" amino acids 464 to 539 (76 residues), 39.2 bits, see alignment E=1.9e-13 PF13086: AAA_11" amino acids 464 to 577 (114 residues), 73.8 bits, see alignment E=6e-24 PF04851: ResIII" amino acids 465 to 535 (71 residues), 23.3 bits, see alignment E=1.7e-08 PF13245: AAA_19" amino acids 469 to 571 (103 residues), 35.9 bits, see alignment E=2.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (802 amino acids)

>mRNA_6894 K14326 UPF1, RENT1 regulator of nonsense transcripts 1 (Rhodosporidium toruloides IFO0880)
MSGYAQHDDFGHLEGASGYSLDLDDTSSLHSSVLSSAQATPGPSTPGDAADALTVNFDDL
SLSGYGAGGAGGAGAGLDGQDADAAAANVANLYEEDFDGMLDDLNREELPPHACSYCGIH
NPACVVRCLICNKWFCNARGSTSGSHIVNHLVRAKHKEVTLHAESPLGETTPECYSCGAK
NVFILGFIPAKSDTVVVLLCRQPCAAMQSSKDIVWDTTQWSPLIEDRSFLSWLVKVPSEQ
EQLRAKQITFHQINRLEELWRDNANATLEDLEKPGVDDEPQPILLRYEDAYQYQNIFGPL
VKIEADYDKRLKESQTQDGLVVRWDMGLNQKRIAWFNLPKLESGEVRLAVGDELRLRYNG
ELHKPWEGVGHVIKVPNNVSDEIALELKRSDHVPIDCTHNFSADFVWKSTSFDRMQQAMR
TFAVDEQSVSGYIYHKLMGHDADPPQVLRAQMPKRVSAPNLPDLNHSQIYAVKSVLQKPL
SLIQGPPGTGKTVTSASIVYHLSKMNPGQVLVAAPSNVAVDQLTEKIHQTGLKVVRVTAK
SREALESSVSFLTLHAQVANSDTHPELSKLIQLKQEQGVDEDGREGDLDECGRYLRDLCR
MRRPATQEPQVQDGSDRRGDPGDGARVHDSAHVRRQAARHGWRPLTARSDHHEQESSSRR
PQSVSLRAPHSPRQPPDPPASAVPHAPLPLRVSLEHVLRGHAPERCHGARTAAQERRLPL
AAADDADVLPPEPRSGGDLVERYFFPQPDGGVERRKDRHPLLQGRRHAEPDRYHHAVRGS
ALVPRLVHADERLAQEGAVQGD