Protein Info for mRNA_6900 in Rhodosporidium toruloides IFO0880

Name: 15268
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 transmembrane" amino acids 40 to 65 (26 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 344 to 367 (24 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details amino acids 402 to 425 (24 residues), see Phobius details amino acids 435 to 460 (26 residues), see Phobius details amino acids 533 to 552 (20 residues), see Phobius details PF06609: TRI12" amino acids 22 to 549 (528 residues), 84.8 bits, see alignment E=5e-28 PF07690: MFS_1" amino acids 47 to 453 (407 residues), 52.8 bits, see alignment E=3.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (584 amino acids)

>mRNA_6900 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MLPDYDRKDTMDDEKATETRIEDTTNATVEPVYKVSPRAIGCVVGASFALFAATFGVTST
GVYAASIGVGAGDPSATPWFSNTAQICQAILGPLFSLSADLWGRKPFMVIGLAIGCIGGI
VTSTSHMHQVALLGAVLTGIGFATQGLYVAVCSEVMPRSQRPKVQALLNVVGSSGGAFGI
AAGGLYVKYNVVGAGWRMIYATLAIVYGLASITILLCYRPLQKRPDVSAVFHQRNPALVL
DLVGIALLLCGIPPLYYGFVSALNPYKWSDAHVLAPLLTGVAGLVAFGVWEWKGNKEGLL
HHALFSKSRNYGISLALLFLEGILFFSFNAFWSREASLILGLPAWLAGLNFLWFYIISVL
ATPVFGWASQRFKEVRGGLTVGFGLFLGASIGMATVNPGSRIAFRAYAVLGGIAFASPLT
LMSVCAQLAAPPQLLALASINLLVSRALGGVVAVACYNAVTKTRLAANLGPRLAAAVTPL
GFPASEMQGLIQAAQISGPQGVAALKELKGMTPSIIETVQATMPHIYADSYRWVWVIAAP
VALIAIVLIWQLEPIAPMMTARIDAPADVKAEARSALERDVETL