Protein Info for mRNA_6905 in Rhodosporidium toruloides IFO0880

Name: 15273
Annotation: K14300 NUP133 nuclear pore complex protein Nup133

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1344 transmembrane" amino acids 412 to 432 (21 residues), see Phobius details amino acids 452 to 472 (21 residues), see Phobius details PF08801: Nucleoporin_N" amino acids 102 to 485 (384 residues), 74.7 bits, see alignment E=6.8e-25 PF03177: Nucleoporin_C" amino acids 599 to 1172 (574 residues), 283.6 bits, see alignment E=4.1e-88

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1344 amino acids)

>mRNA_6905 K14300 NUP133 nuclear pore complex protein Nup133 (Rhodosporidium toruloides IFO0880)
MFSSGAAGTPQRTTRRSARASRVASTLTSTAATPQPSPPQTARTLGANLQVAQRSLTASP
APSRRTARSVAAASDVGSAMDVEEGATAAGRKDQDKVLVRDDSYTITERRALPVEVQQAV
AGSDAYTQPVKAVLDPITGFALLVSSEHCFVWNWSNRVGSTTTYIFPVPPQAPFPPNVAA
YSPLSFASLVPSPSQTVQQAGQREPGLVVVSNVGTVRFWESVSLSLSGVDRFKSASCPLN
EGELVKDLKLISPTTYLLSTTQPRLFSITIISHAGRADLSVRHLERSLGWAGSVWSAVFG
SKTVDPRAGILALALSQPKPNEAERTVYAVMEKNVQVWKVPVRSEGGERLLVEQDIFAGV
LEALAGEKIGNEQWALNEGKVEIVDAAVTASGHLAVLISHVHDGTASDSLSFAIVMLEVG
SSANSVAVAGLTHLTYQSRPDPRPLSTPRLSLGSGEIAFVVFADAVVIASIAHDSTFEEA
FPLRKNTDRFLGLSMPSYLPCPPAAIETLSLLTSSPSIFSVSVSPPQGNRLIAPGTEGYK
TRRLQTRIEQAVFFGTDEAQNPLAFDLQPDFEGDLAVAAVAVSSGILASNSANMPLILDL
RAQLADRVHRAKVLIEYINVNGLLGKIPQYARQQLSWDAERLAAAVALWHNQNARLGSGS
SILSDAILQYMDEIGEGFGEDPLRLFFRTKVSGLGNVLEEVTRRAKAVAESSQASAEEKS
LHLREANEAVLLAFNAVARHRKETSSHYGLDSSSIPSEPWSSRALLLDSLQWHFEATDGL
LRERVRQLGARVDEEQARFGRGADMSEKQAVQAELKAQLAGVAEFMFSAFEERLLYLETV
NGDAPAPELRQLRERYLEVRPRFIRMLVAIGKVAAAYELGERHRDFDSLVHLSNDPTHGS
ASRIRSYLDQYRRDFAFPLYRFYLDQGKLRTLLEPEEAHRPLLTAFLDSTENNKLAWIND
VAIDRFDHVSLALSTEAVEEPSVATKKLMLSLSKLAQVAQLDQQALEGEDVQRALEAVDD
NLDLVNTQQNLSTFFTSLLSGTEMRMPPTEQGEVVAARIAPVLTDRPALAQQLANLCARV
FADESISPEDLIDILSLKENYNEHASDFAAALDVLLRAKDLPDARRKVALESVWRRVYIQ
DDWAALRSSAGLKDEEMAAALRNTAFHATLAAARKSRQPQDMLLEPSYSFSSATPDELAA
RFPDLPSSTIDALLSDYEQEGRLLNEAMQAGLEACCKECVRLLDEEQEGGSSEEELGGSA
VMVDRVHVHWNHQRGVVHSQRREEEEREAEATFRRRSLAACPEPLVWQEILISSRAAARE
AKRVTATGTRTSGFADALSYLRTS